Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAAATAAAALAAADPPPAMPQAAGAGGPTTRRDFYWLRSFLAGGIAGCCAKTTVAPLDRVKVLLQAHNH-------HYKHLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGISGH----VHRLMAGSMAGMTAVICTYPLDMVRVRLAFQVK-GEHSYTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSHAPTLLGRPSSDNPNVLVLKTHVNLLCGGVAGAIAQTISYPFDVTRRRMQLGTVLPEFEKCLTMRDTMKYVYGHHGIRKGLYRGLSLNYIRCIPSQAVAFTTYELMKQFFHLN |
4C9Q Chain:A ((30-305)) | --------------------------------------NFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNF-AFKDKIKLMFGFKKE-GYGKWFAGNLASGGAAGALSLLFVYSLDFARTRLAADAKS-ARQFNGLTDVYKKTL-KSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLK-------PL-----------FL-----ASFLLGWVVTTGASTCSYPLDTVRRRMMMTS--GQAVKYNGAIDCLKKIVASEGV-GSLFKGCGANILRSVAGAGVISMYDQLQMILFGK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -108587 for 1865 contacts (-58.2/contact) +
2D Compatibility (PS) -25444 + (NN) 4979 + (LL) 3700
1D Compatibility (HY) -16800 + (ID) 4150
Total energy: -146302.0 ( -78.45 by residue)
QMean score : 0.134
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