Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ----MNRAPLKRSRILHMALTGASDPSAEAEANGEKPFLLRALQIALV------VSLYWVTSISMVFLNKY----------------LLDSPSLRLDTPIFVTFYQCLVTTLLCKGLSALAACCPGAVDFPSLRLDLRVARSVLPLSVVFIGMITFNNLCLKYVGVAFYNVGRSLTTVFNVLLSYLLLKQTTSFYALLT-CGIIIGGFWLGVDQEGAEGTLSWL--------GTVFGVLASLCVSLNAIYTTKVLPAVDGSIWRLTFYNNVNACILFLPLLLLLGELQALRDFAQLGSAHFWGMMTLGGLFGFAIGYVTGLQIKFTSPLTHNVSGTAKACAQTVLAVLYY-------EETKSFLWWTSNMMVLGGSSAYTWVRGWEMKKTPEEPSPKDSEKSAMGV---- |
3FGA Chain:B ((1-403)) | PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIA--KKYIDQKFVLQLLELFDSEDPRERDFLKTT-LHRIYGKFLGLRAY-IRKQINNIFYRFIYET--EHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVA-ERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3FGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -245789 for 2479 contacts (-99.1/contact) +
2D Compatibility (PS) -36337 + (NN) -4317 + (LL) 528
1D Compatibility (HY) -13200 + (ID) 2600
Total energy: -301715.0 ( -121.71 by residue)
QMean score : 0.297
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