Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEMKLPGQEGF--EASSAPRNIPSGELDSNPDPGTGPSPDGPSDTESKELGVPKDPLLFIQLNELLGWPQALEWRETGSSSASLLLDMGEMPSITLSTHLHHRWVLFEEKLEVAAGRWSAPHVPTLALPSLQKLRSLLAEGLVLLDCPAQSLLELVEQVTRVESLSPELRGQLQALLLQRPQHYNQTTGTRPCWGSTHPRKASDNEEAPLREQCQNPLRQKLPPGAEAGTVLAGELGFLAQPLGAFVRLRNPVVLGSLTEVSLPSRFFCLLLGPCMLGKGYHEMGRAAAVLLSDPQFQWSVRRASNLHDLLAALDAFLEEVTVLPPGRWDPTARIPPPKCLPSQHKRLPSQQREIRGPAVPRLTSAEDRHRHGPHAHSPELQRTGRLFGGLIQDVRRKVPWYPSD-FLDALHLQCFSAVLYIYLATVTNAITFGGLLGDATDGAQGVLESFLGTAVAGAAFCLMAGQPLTILSSTGPVLVFERLLFS-----FSRDYSLDYLP-----FRLWVG--------------IWVATFCLVLVATEASVLVRYFTRFTEEGFCALISLI--------FIYDAVGKMLNLTHTYPI-------QKPGSSAYGCLCQYPGPGGNESQWIRTRPKDRDDIVSMDLGLI--NASLLPPPECTRQGGHPRGPGCHTVPDIA-FFSLLLFLTSFFFAMALKCVKTSRFFPSVVRKGLSDFSSVLAILLGCGLDAFLGLATPKLMVPREFKPTLPGRGWLVSPFGANPWWW---SVAAALPALLLSILIFMDQQITAVILNRMEYRLQKGAGFHLDLFCVAVLMLLTSALGLPWYVSATVISLAHMDSLRRESRACAPGERPNFLGIREQRLTGLVVFILTGASIFLAPVLKFIPMP---------VLYGIFLYMG------VAALSSIQ----------FTNRVKLLLMPAKHQPDLLLLRHVPLTRVHLFTAIQLACL--GLLWIIKSTPAAIIFPLMLLGLVGVRKALERVFSPQELLWLDELMPEEERSIPEKGLEPEHSFSGSDSEDSELMYQPKAPEINISVN |
| 4PKF Chain:A ((8-864)) | KVLEYKGKKLNFTPEDPAEETIPADELHEHLQK--------PSTARTKRLKER------------------CRWKHASA---------GEFIEKSVTAGI-ERMRYLTEAHKASEGKPEAIRRALGLANVLNKSTLVLQEDEFIVGYHAEDPNMF--------PLYPELS------------HMAVQDYLRSDYSPQPADEAAAINEYWKPHSLQSKCQPYF----------------------------DPADLGRMYQVSS--------MEAPSFASGYNSIVPPYETVLED----GLLARIKLAEKHIAEAQADMSTFPWNGTKGLDNIAKIDNWKAMVIACKAVISWARRQGRLCKIVAENFE-----------TDPKRQAELLE--IADICQRIPAEPCKGLKDAMQAKFFTFLICHAIERYAS--------GYAQK-EDTLLWPYYKASVVDKKF-----QPMSHMDAV-ELVEMERLKISEHGAGKSRAY-REIFPGSNDLFILTVGGTNAKGEDACNDMTDAILEAAKRIRTAEPSIVFRYSKKNREKTLRWVFECIRDGLGYPSIKHDEIGTEQMKEYAKFSLNGNGATDEEAHNWVNVLCMSPGIHGR-RKTQKTRSEGGGSIFPAKLLEISLNDGYDWSYADMQLG--PKTGDLSSLKSFEDVWEAFRKQYQYAINLCISTKDVSRYFEQRFLQ-MPFVSAIDDGCMELGMDACALSEQP------------------------NGWHNPITTIVAANSLVAIKKLVFEEKKYTLEQLSQALKANWEG------FEEMRVDFKRAPKWGNDDDYADGIITRFYEEIIGGEMRK-----ITNYSG-------GPVMPTGQAVGLYMEVGSRTGPTPDGRFGGEAADDGGISPYMGTDKKGPTAVLRSVSKVQKNQKGNLLNQRLSVPIMRSKHGFEIWNSYIKTWHDLNI-DHVQFNVVSTDEMRAAQREPEKHHDLIVRVSGYSAR--------------FVDIPTYGQNTIIAR---QEQDFSASDLEF-----------LNVEI- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PKF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -404879 for 7026 contacts (-57.6/contact) +
2D Compatibility (PS) -80889 + (NN) -18172 + (LL) 10780
1D Compatibility (HY) -17200 + (ID) 7550
Total energy: -517910.0 ( -73.71 by residue)
QMean score : 0.252
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