Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLNLSVDEVLTTTRSVRKRLDFDKPVPRDVLMECLELALQAPTGSNSQGWQWVFVEDAAKKKAIADVYLANARGYLSGPAPEYPDGDTRGERMGRVRDSATYLAEHMHRAPVLLIPCLKGREDE------------------------S-------AVGGVSFWASLFPAVWSFCLALRSRGLGSCWTTLHLLDNGEHKVADVLGIPYDEYSQGGLLPIAYTQGIDFRPAKRLPAESVTHWNGW
1NOX Chain:A ((8-205))
----LDAKTAALKRRSIRRYR--KDPVPEGLLREILEAALRAPSAWNLQPWRIVVVRDPATKRALREAAF-----------G-----------Q-----------AHVEEAPVVLVLYADLEDALAHLDEVIHPGVQGERREAQKQAIQRAFAAMGQEARKAWASGQSYILLGYLLLLLEAYGLGSVPMLGF----DPERVRAILGLP-SRAAIPALVALGYPAEE-GYPSHRLPLERVVLWR--
General information:
TITO was launched using:
RESULT:
Template:
1NOX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107875 for 1211 contacts (-89.1/contact) +
2D Compatibility (PS) -18115 + (NN) -8381 + (LL) 1456
1D Compatibility (HY) -7600 + (ID) 2400
Total energy: -142915.0 ( -118.01 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_1NOX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NOX-query.scw
PDB file :
Tito_Scwrl_1NOX.pdb
: