Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | GALTAQGASFFTAAPLSYNTGNSTISLDYRSPQLRVS-GGALAL--------TSPVFVYQTP-----FNTPMRLRNGTYNEYADAHIQMVRFGTTVLFNIDVTGETN--ATGTQTWEL-QFDGTLGSCLTGRMQVMGGTGEELDVTPTFILPTSDKSVYKQGFMPIVCSENGEFKQSTYCSYALTYR-LGNFYITLKSTTSGCKPIFQMSFMYESQIGIV |
| 3TC2 Chain:A ((25-174)) | ------------------------------ISTFWGALGGDVYLGKSPNSDAPCANGVFRYNSDVGPSGTPVRFIG--S---SSHFGQGIFEDELL--NIQFAISTSKMCVSYTIWKVGDYDASLG----TMLLETGGTIGQA-DSSWFKIVKSSQFGYNLLYCPV----------DQFCLKVGVVHQNGKRRLALV----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TC2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -44442 for 824 contacts (-53.9/contact) +
2D Compatibility (PS) -13698 + (NN) -3499 + (LL) 3848
1D Compatibility (HY) -3200 + (ID) 1250
Total energy: -62241.0 ( -75.54 by residue)
QMean score : 0.156
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