Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GALTTSTRQGSRVVGFMDFI-IALGWQIIPSNIRYIYILNCSQFMP--------TSDVTTIYFQA--DSGLESIFVMDSPFYASCTQQ-LPDKTIKTY-GVTISKKQSIISIN-----FSSSLEPNIMVSAWTASITRTQ-
3F1J Chain:A ((3-142))
SKHSYVELKDKVIVPGWPTLMLEIDFVGGTSRNQFLNIPFLSVKEPLQLPREKKLTDYFTIDVEPAGHSLVNIYFQIDDFLLLTLNSLSVYKDPIRKYMFLRLNKEQSKHAINAAFNVFSYRLR-NIGVGPLGPDIRSSGP
General information:
TITO was launched using:
RESULT:
Template:
3F1J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51239 for 762 contacts (-67.2/contact) +
2D Compatibility (PS) -12700 + (NN) 579 + (LL) -140
1D Compatibility (HY) -7200 + (ID) 1250
Total energy: -71950.0 ( -94.42 by residue)
QMean score : 0.265
(partial model without unconserved sides chains):
PDB file :
Tito_3F1J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F1J-query.scw
PDB file :
Tito_Scwrl_3F1J.pdb
: