Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADCAAHDESPGNNVVDISVPPTTD
2F9M Chain:A ((2-182))
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHD-----------------
General information:
TITO was launched using:
RESULT:
Template:
2F9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112195 for 1487 contacts (-75.5/contact) +
2D Compatibility (PS) -19924 + (NN) -7166 + (LL) 28
1D Compatibility (HY) -24000 + (ID) 8950
Total energy: -172207.0 ( -115.81 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_2F9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F9M-query.scw
PDB file :
Tito_Scwrl_2F9M.pdb
: