Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRILSLLGVIALFLGVILVSCGNDDDNKNTTGVHKIVVEQSGNTDDFDLNIAFGAANTGGVAKLYNENGEYLGDSYLVNKVTENKISCQTGKEGSMMTCAGSVISTSEQAGKKLKISVIAYIDNKEVNRLEKEYITKGSTLVENFSVSTTSVE
2LRG Chain:A ((4-126))
-----------------------------DFQTGIHKIVIQQSGDTDSFEVSVSIGGADKGGPAKLYNDKGEYIGDSYS-AQIRTATMSCCTNGNAFFMTCAGSVSSISE-AGKRLHITVIGYIDDKEVNRLEKEYITDGNTLIETFSVSTKEI-
General information:
TITO was launched using:
RESULT:
Template:
2LRG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36293 for 885 contacts (-41.0/contact) +
2D Compatibility (PS) -13431 + (NN) -5345 + (LL) 2468
1D Compatibility (HY) -12800 + (ID) 3600
Total energy: -69001.0 ( -77.97 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_2LRG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LRG-query.scw
PDB file :
Tito_Scwrl_2LRG.pdb
: