Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRALSLLLALCLCLSLMPAASASVVESTVQVGPYTFEIWFDGTATLTRYDESLAGSTYADIPASVTDENGQEYPVTVIGEKAFEET--NITGVTVPDSVISIGRLAFAYCNSLSDVKLS----ENLIYINELAFASCDALKEITIPASVEKMD-NPFRWSNALDTVYMEGMVAPE
4GT6 Chain:A ((8-147))
-----------------------------AYTDGSYQFILNADNTATITKYTGN---EHRITIPAQVTH-GAYIYPVSKIGDRVFCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTVTIPEG----
General information:
TITO was launched using:
RESULT:
Template:
4GT6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109555 for 1014 contacts (-108.0/contact) +
2D Compatibility (PS) -13824 + (NN) -1569 + (LL) 3644
1D Compatibility (HY) -8400 + (ID) 2400
Total energy: -132104.0 ( -130.28 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_4GT6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GT6-query.scw
PDB file :
Tito_Scwrl_4GT6.pdb
: