Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMVMKRPSLRQFSWLLGGSLLLGALFWLWLAVQQQEATLAIRPVGQGIGMPDGFSVWHHLDANGIRFKSITPQKDGLLIKFDSTAQGAAAKEVLGRALPHGYIIALLEDDNSPTAWLSRLRDAPHRLG
2DNP Chain:A ((77-145))
----------------------------------NTWKIFVGNVSAACTS---QELRSLFERRG-RVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE---------------------
General information:
TITO was launched using:
RESULT:
Template:
2DNP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50449 for 497 contacts (-101.5/contact) +
2D Compatibility (PS) -7677 + (NN) -2129 + (LL) 3968
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -58837.0 ( -118.38 by residue)
QMean score : 0.205
(partial model without unconserved sides chains):
PDB file :
Tito_2DNP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DNP-query.scw
PDB file :
Tito_Scwrl_2DNP.pdb
: