Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------MGHHHHHHSHMVVI------HPDPGRELSPEEAH-RAGLID------WNMFVKLRSQECDWEEISVKGPNGESSVIH-DRKSGKKFSIEEALQSGRLTPAHYDRYVN----------KDMSIQELAVLVS--GQK----
1H3Q Chain:A ((1-140))
MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQ------EDGIKN--FFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS
General information:
TITO was launched using:
RESULT:
Template:
1H3Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5223 for 607 contacts (-8.6/contact) +
2D Compatibility (PS) -11272 + (NN) -2619 + (LL) 192
1D Compatibility (HY) -5600 + (ID) 1150
Total energy: -25672.0 ( -42.29 by residue)
QMean score : 0.221
(partial model without unconserved sides chains):
PDB file :
Tito_1H3Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H3Q-query.scw
PDB file :
Tito_Scwrl_1H3Q.pdb
: