@TOME V2.2
(Nov 2016)

Ref. - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : T0798: (2014-05-29 )
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADCAAHDESPGNNVVDISVPPTTD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_5(2F9M)
RB11B_HUMAN
[Raw transfer]



GTP_A_7(2D7C)
RB11A_HUMAN
[Raw transfer]



GTP_A_16(2HV8)
RB11A_HUMAN
[Raw transfer]



GNP_A_3(1YZK)
RB11A_HUMAN
[Raw transfer]



GSP_A_2(1OIW)
RB11A_HUMAN
[Raw transfer]



GDP_A_7(4LX0)
RB11A_HUMAN
[Raw transfer]



GDP_A_3(2F9L)
RB11B_HUMAN
[Raw transfer]
2 PsiBlast_PDB 90.3798%-116 - C1 -2F9M 10.9 RB11B_HUMAN
41 HHSearch 88.6199%-122 - C1 -2F9L - RB11B_HUMAN -
1 PsiBlast_PDB 88.3798%-122 - C1 -2F9L 9.1 RB11B_HUMAN
4 PsiBlast_PDB 85.9797%-121 - C1 -4LX0 9.1 RB11A_HUMAN
9 PsiBlast_PDB 82.6396%-125 - C1 -1OIX - RB11A_HUMAN -
10 PsiBlast_PDB 82.5996%-126 - C1 -2D7C 10.7 RB11A_HUMAN
6 PsiBlast_PDB 82.3097%-123 - C1 -2HV8 9.5 RB11A_HUMAN
16 PsiBlast_PDB 82.1070%-125 - C1 -3RWO - YPT32_YEAST -
3 PsiBlast_PDB 81.9097%-132 - C1 -4LWZ - RB11A_HUMAN -
13 PsiBlast_PDB 81.8075%-131 - C1 -3BFK - ? -
5 PsiBlast_PDB 81.6397%-124 - C1 -1YZK 10.3 RB11A_HUMAN
8 PsiBlast_PDB 81.5196%-125 - C1 -1OIW 10.0 RB11A_HUMAN
15 PsiBlast_PDB 81.1370%-119 - C1 -3RWM - YPT32_YEAST -
7 PsiBlast_PDB 80.8797%-120 - C1 -1OIV - RB11A_HUMAN -
19 PsiBlast_PDB 79.6349%-119 - C1 -2BCG - YPT1_YEAST -
11 PsiBlast_PDB 79.3396%-124 - C1 -2GZD - RB11A_HUMAN -
18 PsiBlast_PDB 78.5869%-120 - C1 -2OIL - RAB25_HUMAN -
14 PsiBlast_PDB 78.5763%-128 - C1 -3CPJ - YPT31_YEAST -
12 PsiBlast_PDB 78.4196%-119 - C1 -2GZH - RB11A_HUMAN -
31 SP3 77.8081%-120 - C1 -1OIV - RB11A_HUMAN -


User Run . : Multi Template Modeling Result:

(5 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_5(2F9M)
RB11B_HUMAN
[Raw transfer]



GTP_A_7(2D7C)
RB11A_HUMAN
[Raw transfer]



GTP_A_16(2HV8)
RB11A_HUMAN
[Raw transfer]



GNP_A_3(1YZK)
RB11A_HUMAN
[Raw transfer]



GSP_A_2(1OIW)
RB11A_HUMAN
[Raw transfer]



GDP_A_7(4LX0)
RB11A_HUMAN
[Raw transfer]



GDP_A_3(2F9L)
RB11B_HUMAN
[Raw transfer]
80 97.22100%-122 - C- -M080 - -
81 97.16100%-126 - C- -M081 - -
83 95.42100%-127 - C- -M083 - -
75 93.14100%-115 - C- -M075 - -
76 91.56100%-113 - C- -M076 - -