@TOME V2.2
(Nov 2016)
Ref.
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : CTL1_HUMAN: (2015-12-07 )
MGCCSSASSAAQSSKREWKPLEDRSCTDIPWLLLFILFCIGMGFICGFSIATGAAARLVSGYDSYGNICGQKNTKLEAIPNSGMDHTQRKYVFFLDPCNLDLINRKIKSVALCVAACPRQELKTLSDVQKFAEINGSALCSYNLKPSEYTTSPKSSVLCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALITFVSDNSVLHRLISGVMTSKEIILGLCLLSLVLSMILMVIIRYISRVLVWILTILVILGSLGGTGVLWWLYAKQRRSPKETVTPEQLQIAEDNLRALLIYAISATVFTVILFLIMLVMRKRVALTIALFHVAGKVFIHLPLLVFQPFWTFFALVLFWVYWIMTLLFLGTTGSPVQNEQGFVEFKISGPLQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDKRNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRMILMYIHSQLKGKENACARCVLKSCICCLWCLEKCLNYLNQNAYTATAINSTNFCTSAKDAFVILVENALRVATINTVGDFMLFLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPLIIVCLFAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSRKAMKEAGKGGVADSRELKPMASGASSA
Atome Classification :
(15 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......-----610.......620.......---------------------------630....-...640.......650.....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MGCCSS
A
S
S
A
A
Q
SSKREWKPLEDRSCT
D
I
P
W
L
L
L
F
I
L
F
C
I
G
M
G
F
I
CGFSI
A
T
G
A
A
A
R
L
V
S
G
Y
D
S
Y
G
N
ICGQKNT
K
L
E
AIPNSGMDH
T
Q
R
K
Y
V
F
F
LDPC
N
L
D
L
I
N
R
K
I
K
S
V
A
L
C
V
A
AC
P
R
Q
E
L
K
T
L
S
D
V
Q
K
F
A
EING
S
A
L
C
S
YNLKPSEYTTSPKSSVLCPKLPVPASAPI
P
F
F
HRCAPV
N
I
S
C
Y
A
K
F
A
E
A
L
I
T
FVSD
N
S
V
L
H
R
L
I
S
G
V
MT
S
K
E
I
I
L
G
L
C
L
L
S
L
V
L
S
M
I
L
M
V
I
I
R
Y
I
S
R
V
L
V
W
I
L
T
I
L
V
I
L
GSLGG
T
G
V
L
W
W
L
Y
A
K
QRRSPKETV
T
P
E
Q
L
Q
I
A
E
DNLR
A
L
L
I
Y
A
I
S
A
T
V
F
T
V
I
L
F
L
I
M
L
V
M
R
K
R
V
A
L
T
I
A
L
F
H
VA
G
K
V
F
I
HL
P
L
L
V
F
Q
P
F
W
T
F
F
A
L
V
L
F
W
V
Y
W
I
M
T
L
L
F
LGTTGSPVQNEQ
G
F
V
E
F
K
ISGP
L
Q
Y
M
W
W
Y
H
V
V
G
L
I
W
I
S
E
F
I
L
A
C
Q
Q
M
TVA
G
A
V
V
T
Y
Y
F
TRDKRNLPF
T
P
I
L
A
S
V
N
R
L
I
R
Y
H
L
GTVAKG
S
F
I
I
T
L
V
K
I
P
R
M
I
L
M
Y
I
H
S
Q
LKGK
E
N
A
C
A
R
C
V
L
K
S
C
I
C
C
L
W
C
L
E
K
C
L
N
Y
L
NQNA
Y
T
A
T
A
INSTNFCTSAK
D
A
F
V
I
L
VENA
L
R
V
A
T
I
N
T
V
G
D
F
M
L
F
L
G
K
V
L
I
VCSTGL
A
G
I
M
L
L
NYQQD
Y
T
V
W
V
L
P
L
I
I
V
C
L
F
A
F
L
V
A
H
C
F
L
S
I
Y
E
M
V
V
D
V
L
F
L
C
F
AIDTKYND-----GSP
G
R
E
F
Y
M
D
K
V
L
M
E
F
V
E
N
S
---------------------------
R
K
A
M
K
E
A-GKGGVADSRELKPMASGASSA
20
Fugue
85.15
14%
251
- C3 -
1Q0V
-
VPS27_YEAST
A:
[249-329]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
R
D
Y
S
T
-----
P
E
D
E
E
E
L
I
R
K
A
I
E
L
S
L
K
E
S
R
NSA
S
S
E
P
I
VPVVESKNE
V
K
R
Q
EIEEEE
D
P
D
L
K
A
A
-
I
Q
E
S
L
R
E
A
E
E
A
K
L
R
S
E
R
Q
K
A
-
16
Fugue
77.82
30%
244
- C3 -
1GP8
-
VG08_BPP22
A:
[264-303]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
G
D
V
S
A
A
N
K
D
A
I
---------------------------
R
K
Q
M
D
A
A
A
S
K
G
D
V
E
T
Y
R
K
L
K
A
K
L
K
G
I
R
--
19
Fugue
75.20
12%
204
- C3 -
2FIF
-
RABX5_BOVIN
B:
[12-70]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
L
L
C
K
K
GCGYY
G
N
P
A
W
Q
G
F
C
S
K
C
W
R
E
E
Y
H
K
A
---------------------------
R
Q
K
Q
I
Q
E
-
D
W
E
L
A
E
R
L
Q
R
E
E
E
E
A
F
A
S
S
Q
-
12
Fugue
64.46
22%
421
- C3 -
1Y03
-
ANP3_MYOSC
A:
[1-35]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
M
N
A
P
A
---------------------------
R
A
A
A
K
T
A
-
A
D
A
L
A
A
A
K
K
T
A
A
D
A
A
A
A
A
A
A
A
11
Fugue
61.85
22%
435
- C3 -
1Y04
-
ANP3_MYOSC
A:
[1-35]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
M
N
A
P
A
---------------------------
R
A
A
A
K
T
A
-
A
D
A
L
A
A
A
K
K
T
A
A
D
A
A
A
A
A
A
A
A
17
Fugue
56.93
21%
428
* C3 *
4UOT
-
?
A:
[4-34]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
E
Y
L
L
K
E
I
M
K
L
L
K
E
Q
---------------------------
I
K
L
L
K
E
Q
-
I
K
M
L
K
E
L
E
K
Q
-----------
18
Fugue
48.01
16%
532
- C3 -
2KFE
-
NDB51_MESEU
A:
[1-24]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
G
R
E
F
M
S
N
L
K
E
K
---------------------------
L
S
G
V
K
E
K
-
M
K
N
S
-----------------
14
Fugue
46.52
4%
269
- C3 -
2K6I
-
Y223_METJA
A:
[1-47]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
V
S
V
M
-----
E
A
I
K
E
V
K
L
A
E
E
Q
A
V
K
E
I
E
E
A
---------------------------
K
N
R
A
E
Q
I
-
K
A
E
A
I
E
E
A
K
K
L
I
A
C
-------
6
HHSearch
45.78
25%
-30
- C3 -
3BK7
2
?
A:
[69-84]
----------------------------------------------------------------------------------------------------------
C
T
G
C
G
I
C
V
H
K
C
P
F
N
A
I
S
I
V
N
L
P
E
Q
L
D
E
D
C
V
H
R
Y
G
V
N
A
F
V
L
Y
R
L
P
I
V
K
D
G
M
V
V
G
I
V
G
P
N
G
T
G
K
T
T
A
V
K
I
L
A
G
Q
L
I
P
N
L
C
E
D
N
D
S
W
D
N
V
I
R
A
F
R
G
N
E
L
Q
N
Y
F
E
R
L
K
N
G
E
I
R
P
V
V
K
P
Q
Y
V
D
L
L
P
K
A
V
K
G
K
V
R
E
L
L
K
K
V
D
E
V
G
K
F
E
E
V
V
K
E
L
E
L
E
N
V
L
D
R
E
L
H
Q
L
S
G
G
E
L
Q
R
V
A
I
A
A
A
L
L
R
K
A
H
F
Y
F
F
D
E
P
S
S
Y
L
D
I
R
Q
R
L
K
V
A
R
V
I
R
R
L
A
N
E
G
K
A
V
L
V
V
E
H
D
L
A
V
L
D
Y
L
S
D
V
I
H
V
V
Y
G
E
P
G
V
Y
G
I
F
S
K
P
K
G
T
R
N
G
I
N
E
F
L
Q
G
Y
L
K
D
E
N
V
R
F
R
P
Y
E
I
R
F
T
K
L
S
E
R
V
D
V
E
R
E
T
L
V
E
Y
P
R
L
V
K
D
Y
G
S
F
K
L
E
V
E
P
G
E
I
R
K
G
E
V
I
G
I
V
G
P
N
G
I
G
K
T
T
F
V
K
M
L
A
G
V
E
E
P
T
E
G
K
V
E
W
D
L
T
V
A
Y
K
P
Q
Y
I
K
A
E
Y
E
G
T
V
Y
E
L
L
S
K
I
D
S
S
K
L
N
S
N
F
Y
K
T
E
L
L
K
P
L
G
I
I
D
L
Y
D
R
N
V
E
D
L
S
G
G
E
L
Q
R
V
A
I
A
A
T
L
L
R
D
A
D
I
Y
L
L
D
E
P
S
A
Y
L
D
V
E
Q
R
L
A
V
S
R
A
I
R
H
L
M
E
K
N
E
K
T
A
L
V
V
E
H
D
V
L
M
I
D
Y
V
S
D
R
L
I
V
F
E
G
E
P
G
R
H
G
R
A
L
P
P
M
G
M
R
E
G
M
N
R
F
L
A
S
-----
V
G
I
T
F
R
R
D
P
D
S
G
R
P
R
A
N
K
E
G
---------------------------
S
V
K
D
R
E
Q
-
K
A
R
G
E
Y
Y
Y
A
------------
15
Fugue
44.78
33%
442
- C3 -
2JY0
-
A:
[1-27]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
R
E
M
A
A
S
-----
A
G
G
A
V
F
V
G
L
V
L
L
T
L
S
P
H
Y
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
43.58
31%
781
- C3 -
1FME
-
?
A:
[12-27]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
R
N
E
K
E
L
R
D
F
I
E
K
F
---------------------------
K
G
R
--------------------------
2
HHSearch
33.53
50%
2405
- C1 -
1SOP
1
?
A:
[8-17]
--------------------------------------------------------------------------------------------------------------
A
Q
C
V
P
T
C
P
Q
Y
C
C
P
A
K
R
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
31.62
0%
1082
- C3 -
2KVO
-
PSB28_SYNY3
A:
[90-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
D
R
F
M
R
F
M
E
R
Y
G
A
E
N
G
L
G
F
S
K
S
E
L
E
H
H
H
H
H
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
23.76
13%
713
- C3 -
3X38
-
?
A:
[64-81]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
S
L
Q
E
T
V
E
T
L
L
K
L
F
T
K
S
--------------------------------------------------------------------------------------
1
HHSearch
18.73
33%
1869
- C2 -
3WU2
-
PSBI_THEVL
I:
[22-31]
----------------------------------------------
V
F
G
F
L
S
G
D
P
A
R
N
P
K
R
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------