@TOME V2.2
(Nov 2016)
Ref.
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : T0792: (2014-05-23 )
ESNYISVREEYPDIDSEVRAILLSHAQNGITISSIKSEYRKLTGNPFPLHDNVTDFLLTIPNVTAECSESGKRIFNLKAS
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20..-----......--30........40..------......----50----.......--.60...-.-..-..70........80------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ESN
Y
I
S
V
R
E
EYPD
I
D
S
E
V
R
A
I
L
L
-----
S
HAQN
G
--
I
T
I
S
S
I
K
S
E
Y
R
K
LT------GNPFPL----HD----NV
T
D
F
L
L
--TIPNV
T
-
A
-
E
C
-
S
ESG
K
R
I
F
N
LKAS-------------------------------------
1
PsiBlast_PDB
88.89
34%
-116
- C2 -
2LH9
-
TDRD7_MOUSE
A:
[40-102]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
K
M
L
R
A
V
L
Q
-----
S
H
-
K
N
G
--
I
V
L
P
R
L
Q
G
E
Y
R
S
L
T
------
G
D
W
I
P
F
KQLG
Y
P
----
T
L
E
A
Y
L
R
--
S
V
P
A
V
V
R
I
-
E
A
-
S
R
S
G
E
---------------------------------------------
23
HHSearch
87.80
32%
-115
- C2 -
3RCO
-
TDRD7_HUMAN
A:
[8-83]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
E
G
D
L
V
S
K
M
L
R
A
V
L
Q
-----
S
H
-
K
N
G
--
V
A
L
P
R
L
Q
G
E
Y
R
S
L
T
------
G
D
W
I
P
F
KQLG
F
P
----
T
L
E
A
Y
L
R
--
S
V
P
A
V
V
-
R
I
E
T
-
S
R
S
G
E
I
T
C
Y
A
M
A
--------------------------------------
2
PsiBlast_PDB
85.56
32%
-149
- C2 -
3RCO
-
TDRD7_HUMAN
A:
[14-76]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
K
M
L
R
A
V
L
Q
-----
S
H
-
K
N
G
--
V
A
L
P
R
L
Q
G
E
Y
R
S
L
T
------
G
D
W
I
P
F
----
K
Q
LGFP
T
L
E
A
Y
L
R
--
S
V
P
A
V
V
-
R
I
E
T
-
S
R
S
G
E
---------------------------------------------
3
PsiBlast_PDB
84.36
27%
-145
- C2 -
3S93
-
TDRD5_HUMAN
A:
[12-79]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
K
E
I
R
S
L
L
I
-----
S
-
T
K
D
G
--
L
S
P
Q
E
L
E
K
E
Y
L
L
M
V
------
G
N
H
L
P
L
RILG
Y
R
----
S
T
M
E
L
V
L
--
D
M
P
D
V
V
-
R
-
V
C
-
P
G
A
G
G
T
V
I
-
L
K
A
--------------------------------------
8
Fugue
81.44
25%
-106
- C2 -
3S93
-
TDRD5_HUMAN
A:
[1-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
S
E
Q
E
R
I
Q
E
C
L
R
K
E
I
R
S
L
L
I
-----
S
T
-
K
D
G
--
L
S
P
Q
E
L
E
K
E
Y
L
L
M
V
------
G
N
H
L
P
L
----
R
I
LGYR
S
T
M
E
L
V
L
--
D
M
P
D
V
V
-
R
-
V
C
-
P
G
A
G
G
T
V
-
I
L
K
A
I
-------------------------------------
24
HHSearch
77.73
26%
-128
- C2 -
3S93
-
TDRD5_HUMAN
A:
[11-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
L
R
K
E
I
R
S
L
L
I
-----
S
-
T
K
D
G
--
L
S
P
Q
E
L
E
K
E
Y
L
L
M
V
------
G
N
H
L
P
L
RILG
Y
R
----
S
T
M
E
L
V
L
--
D
M
P
D
V
V
-
R
-
V
C
P
G
A
G
G
T
V
I
L
K
A
I
---------------------------------------
20
SP3
65.50
20%
-68
- C2 -
1F44
-
RECR_BPP1
A:
[1-110]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
D
E
V
R
K
N
L
M
D
MFRDRQAFS
E
H
T
W
K
M
L
L
S
V
C
R
S
W
A
A
W
C
K
L
N
N
----
R
K
W
F
P
A
E
P
E
D
V
R
D
Y
L
L
-----
Y
L
Q
A
R
G
--
L
A
V
K
T
I
Q
Q
H
L
G
Q
L
N
M
L
H
R
R
S
G
L
P
R
P
S
----
D
S
----
N
A
V
S
L
V
M
--
R
--
R
I
R
-
K
-
E
N
-
V
D
A
G
E
---------------------------------------------
9
Fugue
60.37
21%
-64
- C2 -
2H7B
-
A:
[-1-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SARQLSKL
K
R
F
L
T
T
L
Q
Q
F
G
N
D
I
S
P
E
I
G
E
R
V
R
T
L
V
L
-----
G
L
V
N
S
T
--
L
T
I
E
E
F
H
S
K
L
Q
E
A
T
------
N
F
P
--
L
----
R
P
----
F
V
I
P
F
L
K
A-
N
L
P
L
L
Q
-
R
-
E
L
-
L
H
A
A
R
L
A
K
Q
N
P
A
Q
YLAQHEQLLLDAS------------------------
17
Fugue
59.39
14%
-39
- C2 -
3LFK
-
?
A:
[2-123]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SHMSAMAESKVLVKGTPFN
K
P
V
I
K
G
K
L
E
N
N
Y
D
M
S
Q
D
E
V
S
L
L
L
-----
F
L
K
T
H
G
--
G
K
I
P
L
Y
R
I
K
N
E
T
G
L
------
K
D
P
E
S
V
----
L
K
----
N
L
M
D
Y
G
F
--
A
L
E
D
K
E
-------
R
L
G
E
K
I
V
L
T
S
E
G
E
F
V
A
Q
A
I
R
V
R
D
E
E
L
R
L
K
E
M
K
Q
K
KNVNR----------
13
Fugue
46.22
19%
-39
- C2 -
1LQ7
-
?
A:
[1-67]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
R
V
K
A
L
E
E
K
V
K
A
L
E
E
K
V
K
A
L
----------
G
G
G
--
G
R
I
E
E
L
K
K
K
W
E
E
L
K
------
K
K
I
E
E
L
----
G
G
----
G
G
E
-------
V
K
K
V
E
-
E
-
E
V
-
K
K
L
E
E
E
I
K
K
L
----------------------------------------
6
PsiBlast_PDB
44.86
32%
-40
- C2 -
2HLZ
-
KHK_HUMAN
A:
[29-87]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
I
S
L
V
D
K
Y
P
K
E
D
S
E
I
R
C
L
S
Q
R
W
Q
R
G
G
N
A
S
N
S
--
C
T
I
L
S
L
L
G
A
P
C
A
F
M
------
G
S
M
A
P
G
----
H
------
V
A
D
F
V
L
----------------------------------------------------------------
7
PsiBlast_PDB
43.70
39%
-68
- C2 -
3QNT
-
NPCL1_HUMAN
A:
[45-83]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
K
I
T
------
G
D
H
L
I
L
----
L
Q
----
K
I
C
P
R
L
Y
--
T
G
P
N
T
Q
-
A
-
C
C
---
S
A
K
Q
L
V
S
L
E
A
S
-------------------------------------
14
Fugue
43.42
14%
-64
- C1 -
2FSD
-
?
A:
[4-113]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DI
P
W
T
D
L
NRASGVG
S
T
G
I
L
Q
A
R
I
I
N
G
V
I
Y
V
R
G
N
S
I
P
V
-----
P
N
V
A
P
N
F
I
V
P
V
G
T
F
P
P
A
F
----------
G
T
N
L
P
Q
----
F
D
----
S
S
G
T
F
Y
S
HG
N
L
S
L
S
L
-
I
-
N
M
-
S
P
S
G
I
A
V
G
N
P
N
N
T
S
M
N
G
K
T
I
S
F
A
L
S
A
P
L
L---------------------
5
PsiBlast_PDB
42.77
26%
-19
- C2 -
4OBM
1
?
A:
[198-247]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
F
T
N
T
N
I
E
Q
S
D
Y
D
A
K
V
K
A
I
V
Y
-----
T
L
S
Q
N
K
--
S
S
V
T
D
F
Y
I
P
Y
G
D
K
S
------
G
D
D
Y
I
I
----
D
D
----
N
----------------------------------------------------------------------
11
Fugue
40.35
21%
-4
- C1 -
1XAK
-
NS7A_CVHSA
A:
[-1-67]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
Y
H
Y
Q
E
C
V
R
G
T
T
V
I
L
K
-----
E
P
C
P
S
G
--
T
Y
E
G
N
--
S
P
F
H
P
L
A
------
D
N
K
F
A
L
----
T
C
----
T
S
T
H
F
A
F
--
A
---------
C
-
A
D
G
T
R
H
T
Y
Q
L
R
A
R
S
V-----------------------------------
21
SP3
36.78
12%
-42
- C2 -
1HR6
1
MPPA_YEAST
A:
[1-457]
ARTDN
F
K
L
S
S
L
ANG
L
K
V
A
T
S
N
T
P
GH
F
S
A
L
G
L
Y
I
DAGSRFEGRNLKG
C
T
H
I
L
D
R
L
AFKSTEHVE
G
R
A
M
A
E
T
L
E
L
L
GGN
Y
Q
C
T
S
S
RE
N
L
M
Y
Q
A
S
V
F
NQD
V
G
K
M
L
Q
L
M
S
E
T
V
RFPKIT
E
Q
E
L
Q
E
Q
K
L
S
A
E
Y
E
I
D
E
V
W
M
K
P
E
L
V
L
P
E
L
L
H
T
A
A
Y
SGETLGSPLICPRGLIPSIS
K
Y
Y
L
L
D
Y
R
N
K
FYTPEN
T
V
A
A
F
V
GVP
H
E
K
A
L
E
L
T
G
K
Y
LGDWQSTHPP
I
T
K
K
V
A
Q
Y
T
G
G
E
S
C
I
P
P
APVFGN
L
P
E
L
F
H
I
Q
I
G
F
E
G
L
P
IDHPD
I
Y
A
L
A
T
L
Q
T
L
L
G
G
G
G
S
F
S
A
G
G
P
GKGMYSRLYTHVLNQYYFVE
N
C
V
A
F
N
H
S
Y
SD
S
G
I
F
G
I
S
L
S
C
I
PQAAPQ
A
V
E
V
I
A
Q
Q
M
Y
N
T
FAN
K
D
L
R
L
T
-
E
D
E
V
S
R
A
K
N
Q
L
K
S
S
L
L
-----
M
N
L
E
S
K
--
L
V
E
L
E
D
M
G
R
Q
V
L
M
H
------
G
R
K
I
P
------------
V
N
E
M
I
S
--
K
I
E
D
L
K
P
D
-
D
I
-
S
R
V
A
E
M
I
F
T
G
N
V
N
NAGNGKG
R
A
T
V
V
M
Q
G
DRGSFGD
V
E
N
V
L
K
A
Y
GLGNSSS
22
SP3
36.60
18%
-19
* C1 *
1EHX
-
?
A:
[1-94]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQDPTI
N
P
T
S
I
S
A
K
A
G
S
F
A
-
D
T
K
I
T
L
T
P
N
-----
G
N
T
F
N
G
----
I
S
E
L
Q
S
S
Q
Y
T
K
G
------
T
N
E
V
T
L
-----------
L
A
S
Y
L
N
--
T
L
P
E
N
T
-
T
-
K
------
T
L
T
F
D
F
G
V
G
TKNPKLT
I
T
V
L
PKDIPGLE------------------
4
PsiBlast_PDB
34.47
44%
-51
- C2 -
2I6E
-
?
A:
[178-202]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-----
P
H
T
G
R
G
--
I
T
V
T
D
L
A
Q
E
W
F
D
L
T
------
G
H
P
F
-----------------------------------------------------------------------------------
18
SP3
33.32
12%
-33
- C2 -
1HR6
-
MPPA_YEAST
A:
[221-457]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
Q
Y
T
G
G
E
S
C
I
P
P
APVFGN
L
P
E
L
F
H
I
Q
I
G
F
E
G
L
P
IDHPD
I
Y
A
L
A
T
L
Q
T
L
L
G
G
G
G
S
F
S
A
G
G
P
GKGMYSRLYTHVLNQYYFVE
N
C
V
A
F
N
H
S
Y
SD
S
G
I
F
G
I
S
L
S
C
I
PQAAPQ
A
V
E
V
I
A
Q
Q
M
Y
N
T
FA
N
K
D
L
R
L
T
E
D
E
V
S
R
A
K
N
Q
L
K
S
S
L
L
-----
M
N
L
E
S
K
--
L
V
E
L
E
D
M
G
R
Q
V
L
M
H
------
G
R
K
I
P
------------
V
N
E
M
I
S
--
K
I
E
D
L
K
P
D
-
D
I
-
S
R
V
A
E
M
I
F
T
G
N
V
N
NAGNGKG
R
A
T
V
V
M
Q
G
DRGSFGD
V
E
N
V
L
K
A
Y
GLGNSSS
28
HHSearch
27.64
22%
9
- C2 -
1IUR
-
A:
[16-47]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
V
T
S
V
V
E
-----
Q
--
A
W
K
--
L
P
E
S
E
R
K
K
I
I
R
R
L
Y
------
L
K
W
H
P
D
---------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ESN
Y
I
S
V
R
E
EYPD
I
D
S
E
V
R
A
I
L
L
S
HAQN
G
I
T
I
S
S
I
K
S
E
Y
R
K
LTGNPFPLHDNV
T
D
F
L
L
TIPNV
T
A
E
C
S
ESG
K
R
I
F
N
LKAS
58
86.28
100%
-93
- C- -
M058
-
A:
[1-134]
E
S
N
Y
I
S
V
R
E
E
Y
P
D
I
D
S
E
V
R
A
I
L
L
S
H
A
Q
N
G
I
T
I
S
S
I
K
S
E
Y
R
K
L
T
G
N
P
F
P
L
H
D
N
V
T
D
F
L
L
T
I
P
N
V
T
A
E
C
S
E
S
G
K
R
I
F
N
L
K
A
S
57
34.91
100%
69
- C- -
M057
-
A:
[3-90]
E
S
N
Y
I
S
V
R
E
E
Y
P
D
I
D
S
E
V
R
A
I
L
L
S
H
A
Q
N
G
I
T
I
S
S
I
K
S
E
Y
R
K
L
T
G
N
P
F
P
L
H
D
N
V
T
D
F
L
L
T
I
P
N
V
T
A
E
C
S
E
S
G
K
R
I
F
N
L
K
A
S
56
31.30
100%
61
- C- -
M056
-
A:
[3-89]
E
S
N
Y
I
S
V
R
E
E
Y
P
D
I
D
S
E
V
R
A
I
L
L
S
H
A
Q
N
G
I
T
I
S
S
I
K
S
E
Y
R
K
L
T
G
N
P
F
P
L
H
D
N
V
T
D
F
L
L
T
I
P
N
V
T
A
E
C
S
E
S
G
K
R
I
F
N
L
K
A
S