@TOME V2.2
(Nov 2016)
Ref.
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : T0769: (2014-05-08 )
MLTVEVEVKITADDENKAEEIVKRVIDEVEREVQKQYPNATITRTLTRDDGTVELRIKVKADTEEKAKSIIKLIEERIEEELRKRDPNATITRTVRTEVGSSWSLEHHHHHH
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------........---.-------10..-...--...20....---------------..-.--.30.--....-.------..40---....-----------------------------------------------...-----------..-50------........-.---------60.-.-......70..----.----.....80.--.......-90.......----------.------100-.......110--
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------
M
L
T
V
E
V
E
V
---
K
-------
I
TAD-DE
N
--
K
A
E
E
I
V
K
R
V
---------------
I
D
-
E
--
V
E
R
E
--
V
Q
K
Q-Y------PNA----
T
I
T
R
-----------------------------------------------
T
L
T-----------RD-D-------
G
T
V
E
L
R
I
K
-
V
---------KAD-
T
-
E
E
K
A
K
S
I
I
K
L
----
I
----
E
E
R
I
E
E
E
L
--
R
KRDPNA-
T
I
T
R
T
V
R
TE----------V------GSS-WSLEHHHHHH--
8
Fugue
88.95
23%
-101
- C4 -
1YZ7
-
IF2A_PYRAB
A:
[91-266]
K
A
K
L
Q
E
F
K
R
A
Q
K
A
E
N
L
L
K
L
A
A
E
K
L
GKD
F
E
T
A
W
R
E
V
W
V
P
L
E
E
E
WGE
V
Y
A
A
F
E
D
A
A
K
DGIDVLKGHVP
D
E
W
L
P
V
L
K
E
I
I
D
N
YVE
V
P
T
V
T
I
D
A
E
F
---
E
-------
I
T
V
P
-
K
P
N
---
G
V
E
I
I
K
E
A
---------------
L
I
-
R
--
A
R
D
R
--
A
N
K
E
--------
K
D
V
----
E
V
K
F
-----------------------------------------------
T
Y
L
----------------------
G
A
P
R
Y
R
I
D
-
I
---------
T
A
P
-
D
-
Y
Y
K
A
E
E
V
L
E
S
----
I
----
A
E
E
I
L
R
V
I
--
K
E
A
G
G
E
A
-
T
L
L
R
K
E
K
R
----------------------------------
7
Fugue
82.28
37%
-78
- C4 -
2KL8
-
?
A:
[1-85]
---------------------------------------------------------------------------------------
M
E
M
D
I
---
R
-------
F
R
G
D
-
D
------
L
E
A
F
E
K
A
---------------
L
K
-
E
--
M
I
R
Q
--
A
R
K
F
---------
A
G
----
T
V
T
Y
-----------------------------------------------
T
L
D
-----------
G
N
-
D
-----------
L
E
I
R
-
I
---------
T
G
V
-
P
-
E
Q
V
R
K
E
L
A
K
E
----
A
----
E
R
L
A
K
E
--------
F
N
I
-
T
V
T
Y
T
I
R
-------------------------
L
E
H
H
H
H
H
H
--
19
HHSearch
72.86
21%
-64
- C4 -
4HW9
-
?
A:
[174-255]
--------------------------------------------------------------------------------------
R
I
E
W
V
C
---
G
-------
V
G
Y
G
S
D
I
E
--
L
V
H
K
T
I
K
D
V
---------------
I
D
-
T
--
M
E
K
I
--
D
K
N
M
-
P
------
T
F
I
----
G
I
T
--------------------------------------------------
D
-----------
F
G
-
S
-------
S
S
L
N
F
T
I
R
-
V
---------
W
A
K
-
I
-
E
D
G
I
F
N
V
R
S
E
----
L
----
I
E
R
I
K
N
A
L
--
D
A
N
H
----------------------------------------------
40
SP3
70.07
13%
-68
- C4 -
1CG2
-
CBPG_PSES6
A:
[192-304]
----------------------------------------------------------------------------------
S
G
I
A
Y
V
Q
V
N
I
---
T
G
K
A
S
H
AG
A
A
P
E
-
L
G
V
--
N
A
L
V
E
A
S
D
L
---------------
V
L
-
R
--
T
-
M
N
--
I
D
D
K
-
A
------
K
N
L
----
R
F
N
W
-----------------------------------------------
T
I
A
-----------
K
A
-
G
N
V
SNIIP
A
S
A
T
L
N
A
D
-
V
---------
R
Y
A
-
R
-
N
E
D
F
D
A
A
M
K
T
----
L
----
E
E
R
A
Q
Q
K
K
-----
L
P
E
A
-
D
V
K
V
I
V
T
R
G
----------
R
------
P
A
--------------
26
HHSearch
67.44
18%
-63
- C4 -
2QYV
2
?
A:
[265-383]
---------------------------------------------------------------------------------------
S
V
A
T
L
---
V
-------
F
-
N
G
-
D
I
T
--
V
L
Q
S
A
V
Q
K
F
---------------
A
D
-
V
--
I
K
A
E
--
L
A
L
T
-
E
------
P
N
L
----
I
F
T
L
E
K
V
E
KPQ
Q
V
F
S
S
Q
C
T
K
N
I
I
H
C
L
N
V
LPNGVVRNSDVIENVVE
T
S
L
S
IG
V
L
K
-----------
T
E
-
D
-------
N
F
V
R
S
T
M
L
-
V
---------
R
S
L
-
I
-
E
S
G
K
S
Y
V
A
S
L
----
L
----
K
S
----------------------------------------------------------
18
HHSearch
66.15
17%
-93
- C4 -
3UDC
-
MSCS_ECOLI
A:
[182-263]
---------------------------------------------------------------------------------------
A
V
V
N
I
---
A
-------
F
P
I
D
E
D
V
D
--
K
I
I
E
G
L
Q
E
I
---------------
C
E
-
E
--
V
K
K
------
S
-
R
------
D
D
L
IEGP
T
V
L
G
-----------------------------------------------
I
T
D
-----------
M
Q
-
D
-------
S
K
L
V
I
M
V
Y
-
A
---------
K
T
Q
-
P
-
M
Q
K
-
W
A
V
E
R
D
----
I
----
R
Y
R
V
K
K
M
F
--
D
Q
K
-----------------------------------------------
47
SP3
65.18
19%
-30
- C4 -
1XHJ
-
?
A:
[1-88]
--------------------------------------------------------------------------------------------------------
M
P
T
-
E
N
P
--
T
M
F
D
Q
V
A
E
V
---------------
I
E
-
R
--
L
R
P
F
--
L
L
R
D
-
G
------
G
D
C
----
T
L
V
D
-------------------------------------------------------------
V
E
-
D
-------
G
I
V
K
L
Q
L
H
-
G
---------
A
C
G
-
T
----
C
P
S
S
T
I
T
----
L
----
K
A
G
I
E
R
A
L
--
H
E
E
V
P
G
V
-
I
E
V
E
Q
V
F
L
-------------------------
E
H
H
H
H
H
H
--
15
Fugue
62.82
23%
-22
- C4 -
2KJG
-
?
A:
[1-99]
----------------------------------------------------------------------------------MS
I
L
E
D
P
E
F
V
---
K
-------
L
R
Q
F
-
K
G
K
--
V
N
F
N
L
V
M
Q
I
---------------
L
D
-
E
--
I
E
L
D
--
L
R
G
S
-
D
------
N
I
K
----
T
S
I
I
-----------------------------------------------
Y
V
Y
-----------
S
S
----------------------------
H
L
D
-
E
-
I
R
K
N
K
E
F
Y
D
M
----
I
----
A
E
I
L
Q
R
Y
Y
--
K
K
I
G
------
I
E
N
V
N
Q
L
----------
I
------
L
T
T
-
I
K
L
E
H
H
H
H
H
H
--
12
Fugue
60.64
27%
-6
- C4 -
2L82
-
?
A:
[1-162]
-------------------------------------------------------------M
S
Q
I
F
V
V
F
S
SD
P
E
I
L
K
E
I
V
R
E
I
K
R
Q
G
V
R
V
V
L
---
L
-------
Y
S
D
Q
-
D
E
K
--
R
R
R
E
R
L
E
E
F
E
K
Q
GVD
V
R
T
V
E
D
K
E
D
F
R
-
E
--
N
I
R
E
--
I
W
E
R
-
Y
------
P
Q
L
----
D
V
V
V
-----------------------------------------------
I
V
T
-----------
T
D
-
D
---------
K
E
W
I
K
D
-
F
---------
I
E
E
-
A
-
K
E
R
G
V
E
V
F
V
V
----
Y
N
N
KD
D
D
R
R
K
E
A
Q
--
Q
E
F
R
S
D
G
-
V
D
V
R
T
V
S
D
K
E
E
L
I
E
Q
V
R
R
F
V
------
R
K
V
-
G
S
L
E
H
H
H
H
H
H
--
44
SP3
60.47
14%
-22
- C4 -
1MWW
-
Y138A_HAEIN
A:
[1-120]
------------------------------------------------------------------------------------------
M
I
---
T
-------
V
F
G
L
-
K
S
K
---
L
A
P
R
R
E
K
L
---------------
A
E
-
V
--
I
Y
N
S
--
L
H
L
G
-
L
DIP---
K
G
K
----
H
A
I
R
-----------------------------------------------
F
L
C
L
E
KEDFYYPFD
R
S
-
D
-------
D
Y
T
V
I
E
I
N
-
L
---------
M
A
G
R
M
-
E
G
T
K
K
R
L
I
K
M
----
L
----
F
S
E
L
E
Y
K
L
GI
R
A
H
D
------
V
E
I
T
I
K
E
----------
Q
------
P
A
H
C
W
G
F
R
G
M
T
G
D
E
AR
20
HHSearch
60.44
16%
-95
- C4 -
2VV5
-
MSCS_ECOLI
A:
[185-265]
--------------------------------------------------------------------------------------
R
N
E
F
I
I
---
G
-------
V
A
Y
D
S
D
I
D
--
Q
V
K
Q
I
L
T
N
I
---------------
I
Q
-
S
--
E
D
R
I
--
L
K
---
D
------
R
E
M
----
T
-
V
R
-----------------------------------------------
L
N
E
-----------
L
G
-
A
-------
S
S
I
N
F
V
V
R
-
V
---------
W
S
N
-
S
-
G
D
-
L
Q
N
V
Y
W
D
----
V
----
L
E
R
I
K
R
E
F
--
D
A
A
G
----------------------------------------------
41
SP3
58.58
15%
-19
- C4 -
1GD0
2
MIF_HUMAN
A:
[1-118]
-----------------------------------------------------------------------------------P
M
F
I
V
N
T
N
V
---
P
------------
R
A
S
--
V
P
D
G
F
L
S
E
L
---------------
T
Q
-
Q
--
L
A
Q
A
T
G
K
P
P
Q
-
Y
I
A
V
H
V
V
P
D
Q
----
L
M
A
F
-----------------------------------------------
G
-
G
-----------
S
S
-
E
-------
P
C
A
L
C
S
L
H
S
I
---------
G
K
I
-
G
-
G
A
Q
N
R
S
Y
S
K
L
----
L
----
C
G
L
L
A
E
R
L
---
R
I
S
P
D
R
-
V
Y
I
N
Y
Y
D
M
N
----------
A
ANVGWN
N
S
T
-
F
A
L
E
H
H
------
42
SP3
58.23
14%
-41
- C4 -
1DPT
-
DOPD_HUMAN
A:
[1-117]
-----------------------------------------------------------------------------------P
F
L
E
L
D
T
N
L
PAN
R
-------
V
P
A
G
-
L
E
K
--
R
L
C
A
A
A
A
S
I
---------------
L
G
-
K
--
P
A
D
R
--
V
N
V
T
-
V
R
-----
P
G
L
----
A
M
A
L
-----------------------------------------------
S
-
G
-----------
S
T
-
E
-------
P
C
A
Q
L
S
I
S
-
S
I
G-------
V
V
G
-
T
-
A
E
D
N
R
S
H
S
A
H
----
F
----
F
E
F
L
T
K
E
L
---
A
L
G
Q
D
R
-
I
L
I
R
F
F
P
L
E
----------
S
WQIGKI
G
T
V
-
M
T
F
L
--------
29
HHSearch
57.92
12%
-76
- C4 -
3MRU
-
?
A:
[267-387]
----------------------------------------------------------------------------------------
F
V
T
V
---
A
-------
L
P
A
E
-
N
Q
D
--
K
L
A
E
L
F
N
Y
Y
---------------
T
E
-
L
--
L
K
T
E
--
L
G
K
I
-
E
------
T
D
I
----
V
T
F
N
E
E
V
ATDAQVFA
I
A
D
Q
Q
R
F
I
A
A
L
N
A
CPNGVMRMSDEVEGVVE
T
S
L
N
VG
V
I
T
-----------
T
E
-
E
-------
N
K
V
T
V
L
C
L
-
I
---------
R
S
L
-
I
-
D
S
G
R
S
Q
V
E
G
M
----
L
----
Q
S
V
A
--------------------------------------------------------
43
SP3
57.64
25%
2
- C1 -
1DDF
-
?
?:
[201-327]
------------------------------------------------------------------------------------
M
E
T
V
A
I
N
L
---
S
--------
D
V
D
-
L
S
K
--
Y
I
T
T
I
A
G
V
M
T--------------
L
S
-
Q
--
V
K
G
F
--
V
R
K
N
G
V
------
N
E
A
----
K
I
D
E
-----------------------------------------------
I
K
N
-----------
D
N
V
Q
-------
D
T
A
E
Q
K
V
Q
-
L
L
R
N
W
H
Q
L
HG
K
K
E
-
A
Y
D
T
L
I
K
D
L
K
K
A
NLCT
L
----
A
E
K
I
Q
T
I
I
--
L
K
D
I
T
S
D
-
S
E
N
S
N
F
R
N
E
-----------------
I
Q
S
-
L
V
L
E
H
H
H
H
H
H
--
45
SP3
56.06
6%
-61
* C4 *
1J27
-
?
A:
[1-98]
----------------------------------------------------------------------------------M
K
A
Y
L
G
L
Y
T
A
---
R
-------
L
E
T
P
-
A
R
S
L
K
E
K
R
A
L
I
K
P
A
---------------
L
E
-
R
--
L
K
A
R
-------
F
-------
P
V
----
S
A
A
R
-----------------------------------------------
L
Y
G
-----------
L
D
-
A
W------
G
Y
E
V
V
G
F
T
-
L
---------
L
G
N
-
D
-
P
A
W
V
E
E
T
M
R
A
----
A
----
A
R
F
L
A
E
-------
A
G
G
F
Q
V
A
L
E
E
F
R
L
E
----------
A
------
F
E
L
-------------
13
Fugue
52.51
24%
43
- C4 -
2KPO
-
?
A:
[1-110]
---------------------------------------------------------------------------------------
M
L
L
Y
V
---
L
-------
I
I
S
N
-
D
K
K
--
L
I
E
E
A
R
K
M
A
---------------
E
K
-
A
N
L
E
L
R
T
--
V
K
T
E
-
D
------
E
L
K
----
K
Y
L
E
-----------------------------------------------
E
F
R
-----------
K
E
-
S
-------
Q
N
I
K
V
L
I
L
-
V
---------
S
-
N
-
D
-
E
E
L
D
K
A
K
E
L
A
----
Q
----
K
M
E
I
D
V
R
T
--
R
K
V
T
S
P
D
-
E
A
K
R
W
I
K
E
F
----------
S
------
E
E
G
-
G
S
L
E
H
H
H
H
H
H
--
21
HHSearch
52.49
21%
-39
- C4 -
1XHJ
-
?
A:
[8-82]
------------------------------------------------------------------------------------------------------------------
M
F
D
Q
V
A
E
V
---------------
I
E
-
R
--
L
R
P
F
--
L
L
R
D
-
G
------
G
D
C
----
T
L
V
D
-----------------------------------------------
V
--------------
E
-
D
-------
G
I
V
K
L
Q
L
H
-
G
---------
A
C
G
-
T
-
C
---
P
S
S
T
I
T
----
L
----
K
A
G
I
E
R
A
L
--
H
E
E
V
P
G
V
-
I
E
V
E
Q
V
F
L
E
---------------------------------
35
HHSearch
51.46
18%
-31
- C4 -
1VEH
-
A:
[11-82]
-------------------------------------------------------------------------------------------------------------
D
D
--
E
V
V
A
M
I
K
E
L
---------------
L
D
T
R
--
I
R
P
T
--
V
Q
E
D
-
G
------
G
D
V
----
I
Y
R
G
-----------------------------------------------
F
--------------
E
-
D
-------
G
I
V
R
L
K
L
Q
-
G
---------
S
C
T
-
S
-
C
---
P
S
S
I
I
T
----
L
----
K
S
G
I
Q
N
M
L
--
Q
F
Y
I
P
E
V
-
E
G
----------------------------------------
22
HHSearch
49.19
19%
-85
- C4 -
2CTF
-
A:
[48-99]
-----------------------------------------------------------------------------------------------------------------------------------------------
N
L
A
K
--
I
T
Q
Q
-
M
------
P
K
V
----
H
I
E
-------------------------------------------------
F
T
-----------
E
G
-
E
-------
D
K
I
T
L
E
--------------
G
P
---
T
E
D
V
S
V
A
Q
E
Q
----
I
----
E
G
M
V
K
-
D
L
--
I
N
R
S
G
P
--------------------------------------------
User Run . : Multi Template Modeling Result:
(5 SA)
.........10........20........30........40........50........60........70........80........90........100.......110
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
L
T
V
E
V
E
V
K
I
TADDE
N
K
A
E
E
I
V
K
R
V
I
D
E
V
E
R
E
V
Q
K
QYPNA
T
I
T
R
T
L
TRDD
G
T
V
E
L
R
I
K
V
KAD
T
E
E
K
A
K
S
I
I
K
L
I
E
E
R
I
E
E
E
L
R
KRDPNA
T
I
T
R
T
V
R
TEVGSSWSLEHHHHHH
69
99.84
100%
-115
- C- -
M069
-
A:
[1-186]
M
L
T
V
E
V
E
V
K
I
T
A
D
D
E
N
K
A
E
E
I
V
K
R
V
I
D
E
V
E
R
E
V
Q
K
Q
Y
P
N
A
T
I
T
R
T
L
T
R
D
D
G
T
V
E
L
R
I
K
V
K
A
D
T
E
E
K
A
K
S
I
I
K
L
I
E
E
R
I
E
E
E
L
R
K
R
D
P
N
A
T
I
T
R
T
V
R
T
---------------
66
98.57
100%
-105
- C- -
M066
-
A:
[1-186]
M
L
T
V
E
V
E
V
K
I
T
A
D
D
E
N
K
A
E
E
I
V
K
R
V
I
D
E
V
E
R
E
V
Q
K
Q
Y
P
N
A
T
I
T
R
T
L
T
R
D
D
G
T
V
E
L
R
I
K
V
K
A
D
T
E
E
K
A
K
S
I
I
K
L
I
E
E
R
I
E
E
E
L
R
K
R
D
P
N
A
T
I
T
R
T
V
R
T
---------------
67
43.59
100%
-
- C- -
M067
-
A:
[1-219]
M
L
T
V
E
V
E
V
K
I
T
A
D
D
E
N
K
A
E
E
I
V
K
R
V
I
D
E
V
E
R
E
V
Q
K
Q
Y
P
N
A
T
I
T
R
T
L
T
R
D
D
G
T
V
E
L
R
I
K
V
K
A
D
T
E
E
K
A
K
S
I
I
K
L
I
E
E
R
I
E
E
E
L
R
K
R
D
P
N
A
T
I
T
R
T
V
R
T
E
V
G
S
S
W
S
L
E
H
H
H
H
H
H
71
43.53
100%
-
- C- -
M071
-
A:
[1-219]
M
L
T
V
E
V
E
V
K
I
T
A
D
D
E
N
K
A
E
E
I
V
K
R
V
I
D
E
V
E
R
E
V
Q
K
Q
Y
P
N
A
T
I
T
R
T
L
T
R
D
D
G
T
V
E
L
R
I
K
V
K
A
D
T
E
E
K
A
K
S
I
I
K
L
I
E
E
R
I
E
E
E
L
R
K
R
D
P
N
A
T
I
T
R
T
V
R
T
E
V
G
S
S
W
S
L
E
H
H
H
H
H
H
70
43.53
100%
-
- C- -
M070
-
A:
[1-219]
M
L
T
V
E
V
E
V
K
I
T
A
D
D
E
N
K
A
E
E
I
V
K
R
V
I
D
E
V
E
R
E
V
Q
K
Q
Y
P
N
A
T
I
T
R
T
L
T
R
D
D
G
T
V
E
L
R
I
K
V
K
A
D
T
E
E
K
A
K
S
I
I
K
L
I
E
E
R
I
E
E
E
L
R
K
R
D
P
N
A
T
I
T
R
T
V
R
T
E
V
G
S
S
W
S
L
E
H
H
H
H
H
H