@tome V2.1
Ref.
-
-
Doc.
Global output mode :
Group entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Selected Ligands Contact
Catalytic Site Atlas
Show alignment :
Best alignments
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
Structural Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Modeller Score
Verify3D Model Score
QMean Model Score
Hide column
Complexes Prediction
Show Ligands of Templates
Comparative Docking Score
Virtual Screening Score
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Comparative Docking Tab
Atome Color :
Mutated
Helix
Strand
Conserved
Query sequence : >T0727: (2012-06-25 )
YMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFITVTKENEELDWNLLKPDIYATIMDFFASGLP
Atome Classification :
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------YMFIQTQD--------TPN-----PNSLKFIPGKPV-LETR-----TMDFPTPAAAFRSPLARQL---FRIE-GVK--SVFFG---PD--------FI---TVT---KENEELDWNLLKPDIYAT--I-MDFFASGL--P-------------------------------------------------
10
Fugue
94.29
22%
-94.08
- C8 -
1PQX
-
?
A:
[1-91]
-----------------------------
M
K
I
I
S
I
S
E
--------
T
P
N
-----
H
N
T
M
K
I
T
L
S
E
S
R
-
E
G
M
T
-----
S
D
T
Y
T
K
V
D
D
S
-
Q
P
A
F
I
N
D
I
---
L
K
V
E
-
G
V
K
--
S
I
F
H
V
---
M
D
--------
F
I
---
S
V
D
---
K
-
E
N
D
A
N
W
E
T
V
L
P
K
V
E
A
V
--
F
E
L
E
H
H
H
H
H
H
----------------------------------------------------
20
SP3
90.86
25%
-86.99
- C8 -
1PQX
-
?
A:
[1-91]
-----------------------------
M
K
I
I
S
I
S
E
--------
T
P
N
-----
H
N
T
M
K
I
T
L
S
E
S
--
R
E
G
M
-----
T
S
D
T
Y
T
K
V
D
D
S
Q
P
A
F
I
N
D
I
---
L
K
V
E
-
G
V
K
--
S
I
F
H
V
---
M
D
--------
F
I
---
S
V
D
---
K
-
E
N
D
A
N
W
E
T
V
L
P
K
V
E
A
V
--
F
E
L
E
H
H
H
H
H
H
----------------------------------------------------
30
HHSearch
90.26
27%
-87.94
- C8 -
1PQX
-
?
A:
[2-82]
------------------------------
K
I
I
S
I
S
E
--------
T
P
N
-----
H
N
T
M
K
I
T
L
S
E
S
R
-
E
G
M
T
-----
S
D
T
Y
T
K
V
D
D
S
-
Q
P
A
F
I
N
D
I
---
L
K
V
E
-
G
V
K
--
S
I
F
H
V
---
M
D
--------
F
I
---
S
V
D
---
K
E
N
-
D
A
N
W
E
T
V
L
P
K
V
E
A
V
--
F
-------------------------------------------------------------
29
HHSearch
83.32
33%
-85.00
- C8 -
2K1H
-
?
A:
[3-84]
-------------------------------
I
I
A
I
S
E
--------
T
P
N
-----
H
N
T
M
K
V
S
L
S
E
P
R
-
Q
D
N
S
-----
F
T
T
Y
T
A
A
Q
-
E
G
Q
P
E
F
I
N
R
L
---
F
E
I
E
-
G
V
K
--
S
I
F
Y
V
---
L
D
--------
F
I
---
S
I
D
---
K
E
-
D
N
A
N
W
N
E
L
L
P
Q
I
E
N
T
--
F
-
A
K
----------------------------------------------------------
2
PsiBlast
82.25
32%
-74.16
- C8 -
1PQX
-
?
A:
[3-80]
-------------------------------
I
I
S
I
S
E
--------
T
P
N
-----
H
N
T
M
K
I
T
L
S
E
S
--
R
E
G
M
-----
T
S
D
T
Y
T
K
V
D
D
S
Q
P
A
F
I
N
D
I
---
L
K
V
E
-
G
V
K
--
S
I
F
H
V
---
M
D
--------
F
I
---
S
V
D
---
K
E
N
-
D
A
N
W
E
T
V
L
P
K
V
E
A
-----------------------------------------------------------------
1
PsiBlast
78.91
36%
-76.63
- C8 -
2K1H
-
?
A:
[4-81]
--------------------------------
I
A
I
S
E
--------
T
P
N
-----
H
N
T
M
K
V
S
L
S
E
P
R
-
Q
D
N
S
-----
F
T
T
Y
-
T
A
A
Q
E
G
Q
P
E
F
I
N
R
L
---
F
E
I
E
-
G
V
K
--
S
I
F
Y
V
---
L
D
--------
F
I
---
S
I
D
---
K
E
-
D
N
A
N
W
N
E
L
L
P
Q
I
E
N
T
----------------------------------------------------------------
36
HHSearch
62.04
30%
-141.53
* C8 *
2O11
1
AROC_MYCTU
A:
[241-267]
----------------------------------------------------------------------------------
D
H
R
L
D
S
Q
L
A
A
A
V
---
M
G
I
Q
-
A
I
K
--
G
V
E
I
G
---
D
G
--------
F
--------------------------------------------------------------------------------------------
33
HHSearch
59.62
27%
-123.93
- C8 -
1QXO
1
AROC_STRPN
A:
[238-267]
------------------------------------------------------------------------------------
K
L
D
A
R
L
A
Q
A
V
---
V
S
I
N
-
A
F
K
--
G
V
E
F
G
---
L
G
--------
F
E
---
A
G
Y
---
R
---------------------------------------------------------------------------------
35
HHSearch
58.35
24%
-117.91
- C8 -
1R53
-
AROC_YEAST
A:
[238-266]
-------------------------------------------------------------------------------------
L
E
A
M
L
A
H
A
M
---
L
S
I
P
-
A
S
K
--
G
F
E
I
G
---
S
G
--------
F
Q
---
G
V
S
---
V
---------------------------------------------------------------------------------
34
HHSearch
58.29
21%
-103.97
- C8 -
1UM0
1
AROC_HELPY
A:
[229-257]
-------------------------------------------------------------------------------------
L
D
A
K
I
A
E
A
M
---
M
G
L
N
-
G
V
K
--
A
V
E
I
G
---
K
G
--------
V
E
---
S
S
L
---
L
---------------------------------------------------------------------------------
3
PsiBlast
50.23
32%
15.04
- C8 -
2FFM
-
?
A:
[3-80]
-------------------------------
I
I
S
I
S
E
--------
T
P
N
-----
H
N
T
M
K
I
T
L
S
E
S
--
R
E
G
M
-----
T
S
D
T
Y
T
K
V
D
D
S
Q
P
A
F
I
N
D
I
---
L
K
V
E
-
G
V
K
--
S
I
F
H
V
---
M
D
--------
F
I
---
S
V
D
---
K
E
N
-
D
A
N
W
E
T
V
L
P
K
V
E
A
-----------------------------------------------------------------
21
SP3
46.31
15%
-82.45
- C8 -
1EHX
-
?
A:
[1-94]
------------MQDPTINPT
S
I
S
A
K
AGS
F
A
D
T
K
I
T
L
--------
T
P
N
-----
G
N
T
---
F
N
G
I
S
E
-
L
Q
S
S
-----
Q
Y
T
K
G
T
N
E
V
T
L
L
A
S
Y
L
N
T
L
-----
P
E
-
N
-
T
--
T
K
T
L
T
---
F
D
FGVGTKNP
K
L
---
T
I
T
V
L
P
K
D
I
P
G
L
E
---------------------------------------------------------------------------
32
HHSearch
45.66
31%
-7.77
- C8 -
1SQ1
1
AROC_CAMJE
A:
[226-254]
-------------------------------------------------------------------------------------
L
D
S
K
L
A
H
A
L
---
M
G
I
N
-
A
V
K
--
A
V
E
I
G
---
E
G
--------
I
N
---
A
S
K
---
M
---------------------------------------------------------------------------------
22
SP3
42.94
11%
-55.45
- C8 -
1IM3
-
US02_HCMVA
D:
[1-95]
P
W
F
Q
I
E
D
N
R
C
Y
I
D
NG
K
L
F
A
R
G
S
I
V
G
NMS
R
F
V
F
D
P
K
A
D
YGG
V
G
E
N
L
Y
V
H
-----
A
D
D
V
E
F
V
P
G
E
S
L
-
K
------------
W
N
V
R
N
L
D
V
M
P
I
F
E
T
L
A
L
R
L
V
L
Q
-
G
-------------
D
--------
V
I
---
W
L
R
---
C
V
P
E
L
-----------------------------------------------------------------------------
31
HHSearch
42.80
21%
10.45
- C8 -
1Q1L
-
AROC_AQUAE
A:
[251-279]
------------------------------------------------------------------------------------
R
I
D
G
R
I
A
Q
A
M
---
M
S
I
Q
-
A
I
K
--
G
V
E
I
G
---
L
G
--------
F
E
---
A
A
R
-------------------------------------------------------------------------------------
28
SP3
39.91
9%
-71.97
- C7 -
2HFT
-
?
?:
[107-218]
------------
N
L
G
QPTIQ
S
F
E
Q
V
GT
K
V
N
V
T
V
E
D
E
R
--------
T
L
V
-----
R
R
N
N
T
F
L
S
L
R
D
V
-
F
G
K
D
L
I
Y
T
L
Y
Y
W
K
S
S
G
K
K
T
A
K
T
N
T
N
E
F
L
---
I
D
V
D
K
G
E
N
--
Y
C
F
S
V
---
Q
A
--------
V
I
PSR
T
V
N
---
R
K
S
T
D
S
P
V
E
C
M
G
----------------------------------------------------------------------
19
Fugue
39.66
13%
-70.03
- C8 -
1W0N
3
A:
[12-131]
-----------------I
T
K
V
E
AEN
M
K
I
G
G
T
Y
A
G
K
I
S
--------
A
P
F
D
G
V
A
L
Y
A
N
A
D
Y
V
S
Y
S
Q
Y
-
F
A
N
S
-----
T
H
N
I
S
V
R
G
A
S
S
N
A
G
T
A
K
V
D
---
L
V
I
G
-
G
V
T
V
G
S
F
N
F
T
G
K
T
P
T
--------
V
Q
---
T
L
S
---
N
I
T
H
A
T
G
D
Q
E
I
K
L
A
L
T
S
D
DG
T
-
W
D
A
Y
V
D
F
I
--
E
F
S
L----------------------------------------------
23
SP3
38.21
3%
-72.77
- C8 -
1HCR
2
A:
[1-52]
-----------------------------------------------------------------------------------------------------------------------------------------
G
R
P
R
A
----
I
N
K
H
E
Q
E
Q
--
I
-
S
R
L
L
E
K
G
H
--
P
R
Q
Q
L
A
I
I
F
GIG
V
S
T
L
Y
R
Y
FPASSIKKRMN--------------------
17
Fugue
37.92
36%
-78.73
- C3 -
2PV9
-
C:
[1-26]
---------------------------------
K
S
S
D
--------
K
P
N
-----
P
R
G
Y
---
P
G
K
F
C
A
N
D
S
D
-----
T
L
E
L
P
------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
37.31
10%
-41.81
- C9 -
1JMX
2
?
A:
[364-494]
-----------------------------------------------
K
-----
V
E
E
V
K
V
V
P
A
F
S
I
-
A
R
I
G
-----
E
N
G
A
S
V
P
K
V
Q
G
R
F
E
A
E
A
W
G
---
K
D
A
N
-
G
-
Q
--
P
L
R
I
G
---
Y
----------
L
---
P
A
S
---
W
K
V
E
P
F
N
E
R
A
V
E
D
E
D
V
K
F
--
A
-
G
K
M
Q
A
D
G
V
F
V
P
G
G
AGPNPERKMMTNNAGN
L
K
V
I
A
T
L
ADGG
Q
T
G
E
G
H
M
I
V
T
V
Q
R
WNNPPLP
User Run . : Multi Template Modeling Result:
.........10........20........30........40........50........60........70........80........90...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
YMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFITVTKENEELDWNLLKPDIYATIMDFFASGLP
57
93.69
100%
-119.93
- C- -
M057
-
A:
[1-94]
Y
M
F
I
Q
T
Q
D
T
P
N
P
N
S
L
K
F
I
P
G
K
P
V
L
E
T
R
T
M
D
F
P
T
P
A
A
A
F
R
S
P
L
A
R
Q
L
F
R
I
E
G
V
K
S
V
F
F
G
P
D
F
I
T
V
T
K
E
N
E
E
L
D
W
N
L
L
K
P
D
I
Y
A
T
I
M
D
F
F
A
S
G
L
P
46
92.73
100%
-134.62
- C- -
M046
-
A:
[1-94]
Y
M
F
I
Q
T
Q
D
T
P
N
P
N
S
L
K
F
I
P
G
K
P
V
L
E
T
R
T
M
D
F
P
T
P
A
A
A
F
R
S
P
L
A
R
Q
L
F
R
I
E
G
V
K
S
V
F
F
G
P
D
F
I
T
V
T
K
E
N
E
E
L
D
W
N
L
L
K
P
D
I
Y
A
T
I
M
D
F
F
A
S
G
L
P
41
91.39
100%
-125.73
- C- -
M041
-
A:
[1-94]
Y
M
F
I
Q
T
Q
D
T
P
N
P
N
S
L
K
F
I
P
G
K
P
V
L
E
T
R
T
M
D
F
P
T
P
A
A
A
F
R
S
P
L
A
R
Q
L
F
R
I
E
G
V
K
S
V
F
F
G
P
D
F
I
T
V
T
K
E
N
E
E
L
D
W
N
L
L
K
P
D
I
Y
A
T
I
M
D
F
F
A
S
G
L
P
55
89.18
100%
-106.13
- C- -
M055
-
A:
[1-94]
Y
M
F
I
Q
T
Q
D
T
P
N
P
N
S
L
K
F
I
P
G
K
P
V
L
E
T
R
T
M
D
F
P
T
P
A
A
A
F
R
S
P
L
A
R
Q
L
F
R
I
E
G
V
K
S
V
F
F
G
P
D
F
I
T
V
T
K
E
N
E
E
L
D
W
N
L
L
K
P
D
I
Y
A
T
I
M
D
F
F
A
S
G
L
P
54
88.21
100%
-105.36
- C- -
M054
-
A:
[1-94]
Y
M
F
I
Q
T
Q
D
T
P
N
P
N
S
L
K
F
I
P
G
K
P
V
L
E
T
R
T
M
D
F
P
T
P
A
A
A
F
R
S
P
L
A
R
Q
L
F
R
I
E
G
V
K
S
V
F
F
G
P
D
F
I
T
V
T
K
E
N
E
E
L
D
W
N
L
L
K
P
D
I
Y
A
T
I
M
D
F
F
A
S
G
L
P