@tome V2.1
Ref.
-
-
Doc.
Global output mode :
Group entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Selected Ligands Contact
Catalytic Site Atlas
Show alignment :
Best alignments
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
Structural Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Modeller Score
Verify3D Model Score
QMean Model Score
Hide column
Complexes Prediction
Show Ligands of Templates
Comparative Docking Score
Virtual Screening Score
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Comparative Docking Tab
Atome Color :
Mutated
Helix
Strand
Conserved
Query sequence : >T0714: (2012-06-14 )
PVHIVDPREHVFVHAITSECVMLACEVDREDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDECAYFTVTI
Atome Classification :
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------PVHIVDPREHVFVHAITSEC-----VMLACEVD-R-EDAP--VRWYKDGQEVEE--S-DFVVL-ENEG-PHRRLVLPATQPSDGGEFQCVA----GDE----CAYFTVTI------------------------------------------------------------------------------------------
2
PsiBlast
89.89
51%
-150.51
- C1 -
2CPC
-
A:
[14-98]
---------------------------------------------------------------------------------------------------------
I
V
Y
P
S
G
K
V
Y
V
A
A
V
R
L
E
R
-----
V
V
L
T
C
E
L
C
-
R
-
P
W
A
E
--
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K
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--
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D
-
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L
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D
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G
E
Y
L
C
E
I
----
D
D
E
----
S
A
S
F
T
V
T
V
------------------------------------------------------------------------------------------
24
HHSearch
89.09
51%
-146.06
- C1 -
2CPC
-
A:
[12-98]
-------------------------------------------------------------------------------------------------------
S
W
I
V
Y
P
S
G
K
V
Y
V
A
A
V
R
L
E
R
-----
V
V
L
T
C
E
L
C
-
R
-
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--
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R
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T
K
D
G
E
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V
V
E
--
S
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P
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L
L
-
Q
K
E
D
-
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R
R
L
V
L
P
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Q
L
E
D
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G
E
Y
L
C
E
I
----
D
D
E
----
S
A
S
F
T
V
T
V
------------------------------------------------------------------------------------------
1
PsiBlast
86.70
46%
-120.48
- C1 -
2E6P
-
A:
[8-95]
------------------------------------------------------------------------------------------------------
P
V
H
I
L
S
P
Q
D
K
V
S
L
T
F
T
T
S
E
R
-----
V
V
L
T
C
E
L
S
-
R
-
V
D
F
P
--
A
T
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Y
K
D
G
Q
K
V
E
E
--
S
-
E
L
L
V
V
-
K
M
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-
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K
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A
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E
C
R
T
----
E
G
V
----
S
A
F
F
G
V
T
V
------------------------------------------------------------------------------------------
22
HHSearch
82.62
47%
-120.48
- C1 -
2E6P
-
A:
[8-95]
------------------------------------------------------------------------------------------------------
P
V
H
I
L
S
P
Q
D
K
V
S
L
T
F
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-----
V
V
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-
R
-
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--
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E
C
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T
----
E
G
V
----
S
A
F
F
G
V
T
V
------------------------------------------------------------------------------------------
52
SP3
77.03
17%
-124.83
- C1 -
1G1C
-
TITIN_HUMAN
A:
[2-99]
---------------------------------------------------------------------------------------------------SME
A
P
K
I
F
E
R
I
Q
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--
Q
G
S
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-----
A
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R
V
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-
G
K
P
D
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--
C
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N
G
V
K
I
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--
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-
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R
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-
Y
W
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C
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D
V
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D
S
A
S
I
M
V
K
A
----
I
N
I
A
G
E
T
S
S
H
A
F
L
L
V
Q
A
K---------------------------------------------------------------------------------------
43
Fugue
75.47
31%
-128.82
- C1 -
2EO1
-
A:
[1-102]
----------------------------------------------------------------------------------------------G
S
S
G
S
S
GK
V
V
F
A
K
E
Q
P
A
H
R
E
V
Q
A
E
A
G
A
S
-----
A
T
L
S
C
E
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A
-
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-
A
Q
T
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--
V
T
W
Y
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K
K
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--
S
-
S
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E
A
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-
C
T
R
R
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V
V
Q
Q
A
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Q
A
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A
G
E
Y
S
C
E
A
----
G
G
Q
----
Q
L
S
F
R
L
Q
V
A
G
QCFG------------------------------------------------------------------------------------
21
HHSearch
74.86
19%
-109.20
- C1 -
1WAA
8
TITIN_HUMAN
A:
[5-90]
------------------------------------------------------------------------------------------------------
L
I
E
V
E
K
P
L
Y
G
--
V
E
V
F
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-----
A
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F
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-
E
-
P
D
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--
G
Q
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A
A
--
S
-
P
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I
-
I
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-
K
K
H
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N
C
Q
L
G
M
T
G
E
V
S
F
Q
A
----
A
N
T
----
K
S
A
A
N
L
K
V
------------------------------------------------------------------------------------------
41
Fugue
73.44
23%
-111.16
- C1 -
1PD6
-
A:
[11-104]
---------------------------------------------------------------------------------------------------DEK
K
S
T
A
F
Q
K
K
L
E
P
A
Y
Q
V
S
K
G
H
K
-----
I
R
L
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V
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L
A
-
D
-
H
D
A
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--
V
K
W
L
K
N
G
Q
E
I
Q
M
--
S
G
S
K
Y
I
F
-
E
S
I
G
-
A
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R
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I
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C
S
L
A
D
D
A
A
Y
Q
C
V
V
----
G
G
E
----
K
C
S
T
E
L
F
V
K
E----------------------------------------------------------------------------------------
53
SP3
70.98
25%
-124.77
- C1 -
1PD6
-
A:
[11-104]
--------------------------------------------------------------------------------------------------DEKK
S
T
A
F
Q
K
K
L
E
P
-
A
Y
Q
V
S
K
G
H
K
-----
I
R
L
T
V
E
L
A
-
D
-
H
D
A
E
--
V
K
W
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K
N
G
Q
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I
Q
M
--
S
G
S
K
Y
I
F
-
E
S
I
G
-
A
K
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T
I
S
Q
C
S
L
A
D
D
A
A
Y
Q
C
V
V
----
G
G
E
----
K
C
S
T
E
L
F
V
K
E----------------------------------------------------------------------------------------
25
HHSearch
68.94
25%
-117.15
- C1 -
2DM7
-
A:
[8-92]
------------------------------------------------------------------------------------------------------
P
A
R
F
T
Q
D
L
K
T
K
E
--
A
S
E
G
A
T
-----
A
T
L
Q
C
E
L
S
---
K
V
A
P
--
V
E
W
K
K
G
P
E
T
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D
--
G
-
G
R
Y
S
L
-
K
Q
D
G
-
T
R
C
E
L
Q
I
H
D
L
S
V
A
D
A
G
E
Y
S
C
M
C
----
G
Q
E
----
R
T
S
A
T
L
T
V
------------------------------------------------------------------------------------------
51
SP3
68.93
17%
-107.33
- C1 -
1FHG
-
MYLK_MELGA
A:
[34-135]
-----------------------------------------------------------------------------------------------A
E
E
K
P
HV
K
P
Y
F
T
K
T
I
L
D
M
E
V
V
--
E
G
S
A
-----
A
R
F
D
C
K
V
E
-
G
Y
P
D
P
E
--
V
M
W
F
K
D
D
N
P
V
K
E
--
S
-
R
H
F
Q
I
-
D
Y
D
E
E
G
N
C
S
L
T
I
S
E
V
C
G
D
D
D
A
K
Y
T
C
K
A
----
V
N
S
L
G
E
A
T
C
T
A
E
L
L
V
E
T
M---------------------------------------------------------------------------------------
26
HHSearch
66.73
25%
-123.83
- C1 -
1PD6
-
A:
[15-102]
------------------------------------------------------------------------------------------------------
S
T
A
F
Q
K
K
L
E
P
A
-
Y
Q
V
S
K
G
H
K
-----
I
R
L
T
V
E
L
A
-
D
-
H
D
A
E
--
V
K
W
L
K
N
G
Q
E
I
Q
M
--
S
G
S
K
Y
I
F
-
E
S
I
G
-
A
K
R
T
L
T
I
S
Q
C
S
L
A
D
D
A
A
Y
Q
C
V
V
----
G
G
E
----
K
C
S
T
E
L
F
V
------------------------------------------------------------------------------------------
23
HHSearch
66.17
17%
-91.96
- C1 -
2DKU
-
A:
[8-93]
------------------------------------------------------------------------------------------------------
A
N
C
F
T
E
E
L
T
N
L
--
Q
V
E
E
K
G
T
-----
A
V
F
T
C
K
T
E
-
H
-
P
A
A
T
--
V
T
W
R
K
G
L
L
E
L
R
A
--
S
-
G
K
H
Q
P
-
S
Q
E
G
-
L
T
L
R
L
T
I
S
A
L
E
K
A
D
S
D
T
Y
T
C
D
I
----
G
Q
A
----
Q
S
R
A
Q
L
L
V
------------------------------------------------------------------------------------------
28
HHSearch
64.05
26%
-116.30
- C1 -
2E7B
-
A:
[8-93]
------------------------------------------------------------------------------------------------------
P
V
R
F
Q
E
A
L
K
D
L
--
E
V
L
E
G
G
A
-----
A
T
L
R
C
V
L
S
-
S
-
V
A
A
P
--
V
K
W
C
Y
G
N
N
V
L
R
P
--
G
-
D
K
Y
S
L
-
R
Q
E
G
-
A
M
L
E
L
V
V
R
N
L
R
P
Q
D
S
G
R
Y
S
C
S
F
----
G
D
Q
----
T
T
S
A
T
L
T
V
------------------------------------------------------------------------------------------
3
PsiBlast
62.89
34%
-139.35
- C1 -
2EO1
-
A:
[18-96]
---------------------------------------------------------------------------------------------------------------
H
R
E
V
Q
A
E
A
G
A
S
-----
A
T
L
S
C
E
V
A
-
Q
-
A
Q
T
E
--
V
T
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Y
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D
G
K
K
L
S
S
--
S
-
S
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R
L
V
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Q
A
G
Q
A
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A
G
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Y
S
C
E
A
----
G
G
Q
----
Q
L
S
F
R
L
Q
V
------------------------------------------------------------------------------------------
56
SP3
62.80
17%
-120.22
* C1 *
1KOA
-
?
?:
[376-472]
------------------------------------------------------------------------------------------------------
Q
P
R
F
I
V
K
P
Y
G
T
E
V
G
--
E
G
Q
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-----
A
N
F
Y
C
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I
-
A
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S
P
P
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--
V
T
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D
D
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--
S
-
V
K
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M
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N
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G
D
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K
N
S
----
Y
G
T
K
E
E
I
V
FLNVTRHSEP--------------------------------------------------------------------------------
42
Fugue
61.55
22%
-101.08
- C1 -
1J88
12
FCERA_HUMAN
A:
[4-171]
----------------------------------------------------------------------------------------------------K
P
K
V
S
L
N
P
P
W
N
R
I
F
----
K
G
E
N
-----
V
T
L
T
C
N
G
N
-
N
-
F
F
E
V
S
S
T
K
W
F
H
N
G
S
L
S
E
E
--
T
-
N
------------
S
S
L
N
I
V
N
A
K
F
E
D
S
G
E
Y
K
C
Q
H
----
Q
Q
V
----
N
E
S
E
P
V
Y
L
E
V
F
S
D
W
L
L
L
Q
A
SAEVVMEG
Q
P
L
F
L
R
CHGWRN
W
D
V
Y
K
V
I
Y
Y
K
DGEALKYWYE
N
H
N
I
S
I
T
NATVED
S
G
T
Y
Y
C
T
G
K
V
WQ
L
D
Y
E
S
E
P
L
N
I
T
V
I
K
45
Fugue
60.83
18%
-141.48
- C1 -
1L6Z
4
CEAM1_MOUSE
A:
[1-203]
E
V
T
I
E
A
VPPQVAED
N
N
V
L
LLVHNLPLALG
A
F
A
W
Y
K
GNTTAIDKEI
A
R
F
V
P
N
S
N
M
N
F
T
G
QAYSG
R
E
I
I
Y
SNG
S
L
L
F
Q
MITMKD
M
G
V
Y
T
L
D
M
T
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EN
Y
R
R
T
Q
A
T
V
R
F
H
V
H
Q
P
V
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Q
P
F
L
Q
V
T
N
T
T
V
KEL
D
S
V
T
L
T
C
L
S
N
-
D
-
I
G
A
N
--
I
Q
W
L
F
N
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Q
S
L
Q
L
--
T
-
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M
T
L
-
S
Q
N
N
---
S
I
L
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I
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A
G
E
Y
Q
C
E
I
----
S
N
P
----
V
S
V
R
R
S
N
S
I
K
L
D
I
I
F
DPS--------------------------------------------------------------------------------
33
HHSearch
59.65
20%
-122.06
- C1 -
1G1C
-
TITIN_HUMAN
A:
[5-96]
------------------------------------------------------------------------------------------------------
A
P
K
I
F
E
R
I
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S
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--
T
V
G
Q
G
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D
-----
A
H
F
R
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K
-
P
D
P
E
--
C
E
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N
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--
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-
D
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I
Y
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W
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N
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G
E
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A
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K
A
I
N
IA
G
E
T
----
S
S
H
A
F
L
L
V
------------------------------------------------------------------------------------------
31
HHSearch
58.71
23%
-113.18
- C1 -
1X44
-
A:
[7-94]
------------------------------------------------------------------------------------------------------
G
I
M
V
T
K
Q
L
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D
T
--
T
A
Y
C
G
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R
-----
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D
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A
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--
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R
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R
V
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A
T
K
A
D
A
A
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Y
S
V
M
T
----
T
G
G
----
Q
S
S
A
K
L
S
V
------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
.........10........20........30........40........50........60........70........80........
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
PVHIVDPREHVFVHAITSECVMLACEVDREDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDECAYFTVTI
67
95.96
100%
-150.34
- C- -
M067
-
A:
[1-195]
P
V
H
I
V
D
P
R
E
H
V
F
V
H
A
I
T
S
E
C
V
M
L
A
C
E
V
D
R
E
D
A
P
V
R
W
Y
K
D
G
Q
E
V
E
E
S
D
F
V
V
L
E
N
E
G
P
H
R
R
L
V
L
P
A
T
Q
P
S
D
G
G
E
F
Q
C
V
A
G
D
E
C
A
Y
F
T
V
T
I
75
93.42
100%
-170.27
- C- -
M075
-
A:
[1-96]
P
V
H
I
V
D
P
R
E
H
V
F
V
H
A
I
T
S
E
C
V
M
L
A
C
E
V
D
R
E
D
A
P
V
R
W
Y
K
D
G
Q
E
V
E
E
S
D
F
V
V
L
E
N
E
G
P
H
R
R
L
V
L
P
A
T
Q
P
S
D
G
G
E
F
Q
C
V
A
G
D
E
C
A
Y
F
T
V
T
I
73
91.78
100%
-153.39
- C- -
M073
-
A:
[1-96]
P
V
H
I
V
D
P
R
E
H
V
F
V
H
A
I
T
S
E
C
V
M
L
A
C
E
V
D
R
E
D
A
P
V
R
W
Y
K
D
G
Q
E
V
E
E
S
D
F
V
V
L
E
N
E
G
P
H
R
R
L
V
L
P
A
T
Q
P
S
D
G
G
E
F
Q
C
V
A
G
D
E
C
A
Y
F
T
V
T
I
77
88.13
100%
-145.23
- C- -
M077
-
A:
[1-96]
P
V
H
I
V
D
P
R
E
H
V
F
V
H
A
I
T
S
E
C
V
M
L
A
C
E
V
D
R
E
D
A
P
V
R
W
Y
K
D
G
Q
E
V
E
E
S
D
F
V
V
L
E
N
E
G
P
H
R
R
L
V
L
P
A
T
Q
P
S
D
G
G
E
F
Q
C
V
A
G
D
E
C
A
Y
F
T
V
T
I
80
24.18
100%
-47.65
- C- -
M080
-
A:
[2-88]
P
V
H
I
V
D
P
R
E
H
V
F
V
H
A
I
T
S
E
C
V
M
L
A
C
E
V
D
R
E
D
A
P
V
R
W
Y
K
D
G
Q
E
V
E
E
S
D
F
V
V
L
E
N
E
G
P
H
R
R
L
V
L
P
A
T
Q
P
S
D
G
G
E
F
Q
C
V
A
G
D
E
C
A
Y
F
T
V
T
I