@tome V2.1
Ref.
-
-
Doc.
Global output mode :
Group entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Selected Ligands Contact
Catalytic Site Atlas
Show alignment :
Best alignments
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
Structural Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Modeller Score
Verify3D Model Score
QMean Model Score
Hide column
Complexes Prediction
Show Ligands of Templates
Comparative Docking Score
Virtual Screening Score
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Comparative Docking Tab
Atome Color :
Mutated
Helix
Strand
Conserved
Query sequence : >T0659: (2012-05-09 )
AVVTVDGEVYGTYSLAKDQTIEIQDGNRLRIQNGQAKMEWADCPDQLCVHQKAISRTGESIICLPNQVVVSVQGSKESELDGIVN
Atome Classification :
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------AVVTVDGE----VYGT---Y------SL---AKD-------Q---TI----EIQ----D-G---N-----R--------L-RI------Q--N-G----QAKMEWA---DCP---D----QLC--V-H-QKA----IS--R-TGE--SIICLPNQVVVSVQGSKES----ELDGIVN----------
18
HHSearch
95.48
26%
-118.07
- C5 -
2KPP
-
?
A:
[10-104]
------------
A
I
I
S
Q
N
G
K
----
V
I
R
E
---
I
------
P
L
---
T
G
H
-------
K
G
N
E
Q
F
----
T
I
K
G
K
G-
A
Q
Y
---
N
-----
L
--------
M
-
E
V
------
D
--
G
-
E
----
R
I
R
I
K
E
D
---
N
S
P
---
D
----
Q
V
G
--
V
-
K
-
M
G
W
----
K
S
--
K
-
A
G
D
--
T
I
V
C
L
P
H
K
V
F
V
E
I
K
S
T
Q
K
D
SKDP
D
T
D
L
I
V
-----------
1
PsiBlast
86.36
31%
-132.97
- C5 -
2KPP
-
?
A:
[48-97]
----------------------------------------------------------------------
D
-
G
---
E
-----
R
--------
I
-
R
I
------
K
--
E
------------
D
---
N
S
P
---
D
----
Q
V
G
--
V
-
K
-
M
G
W
----
K
S
--
K
-
A
G
D
--
T
I
V
C
L
P
H
K
V
F
V
E
I
K
S
T
Q
K
D
----
S
K
D
--------------
2
PsiBlast
70.80
32%
-76.25
- C5 -
3LD7
-
?
A:
[48-91]
----------------------------------------------------------------------
D
-
G
---
E
-----
R
--------
I
-
R
I
------
K
--
E
------------
D
---
N
S
P
---
D
----
Q
V
G
--
V
-
K
-
M
G
W
----
K
S
--
K
-
A
G
D
--
T
I
V
C
L
P
H
K
V
F
V
E
I
K
S
T
------------------------
31
SP3
67.88
10%
-49.15
- C4 -
1JJU
-
?
A:
[274-351]
---------AAP
Q
V
L
A
V
A
P
A
----
R
L
K
I
---------------
G
E
E
-------
T
---
Q
L
----
R
V
A
----
G
-
T
GLG
S
-----
D
--------
L
-
T
L
------
P
--
E
-
G
----
V
A
G
S
V
E
S
---
A
G
N
---
G
----
V
T
V
--
L
-
K
-
L
T
A
----
T
G
--
T
-
P
G
P
--
V
S
L
E
L
-
G
G
Q
K
V
D
L
V
A
Y
D
-----------------------
19
HHSearch
62.49
23%
-20.33
* C5 *
3LD7
-
?
A:
[10-91]
------------
A
I
I
S
Q
N
G
K
----
V
I
R
E
---
I
------
P
L
---
T
G
H
-------
K
G
N
E
Q
F
----
T
I
K
G
KG-
A
Q
Y
---
N
-----
L
--------
M
-
E
V
------
D
--
G
-
E
----
R
I
R
I
K
E
D
---
N
S
P
---
D
----
Q
V
G
--
V
-
K
-
M
G
W
----
K
S
--
K
-
A
G
D
--
T
I
V
C
L
P
H
K
V
F
V
E
I
K
S
T
------------------------
8
Fugue
62.48
24%
-23.77
- C5 -
3LD7
-
?
A:
[5-91]
-------G
D
E
V
V
A
I
I
S
Q
N
G
K
----
V
I
R
E
---
I
------
P
L
TGH
K
G
N
-------
E
---
Q
F
----
T
I
K
----
G
-
K
GA
Q
Y
-----
N
--------
L
M
E
V
------
D
--
G
-
E
----
R
I
R
I
K
E
D
---
N
S
P
---
D
----
Q
V
G
--
V
-
K
M
G
W
-----
K
S
--
K
-
A
G
D
--
T
I
V
C
L
P
H
K
V
F
V
E
I
K
S
T
------------------------
35
SP3
51.62
12%
-66.15
* C4 *
2HFT
-
?
?:
[107-218]
-----
N
L
G
QPTI
Q
S
F
E
Q
V
G
T
----
K
V
N
V
---
T
V
E
D
E
R
T
L
V
---
R
R
N
-------
N
---
T
F
L
S
LR
D
V
F
----
G
-
K
---
D
L
I
Y
--
T
--------
L
-
Y
Y
------
W
--
K
-
S
----
S
G
K
K
T
A
K
---
T
N
T
---
N
----
E
F
L
--
I
-
D
-
V
----------
D
-
K
G
E
--
N
-
Y
C
F
S
V
Q
A
V
I
P
S
R
T
V
N
R
K
----
S
T
D
S
P
V
E
C
M
G-------
34
SP3
50.02
12%
-73.27
- C4 -
2HFT
1
?
?:
[1-106]
SGTTN
T
V
A
A
Y
N
L
T
W
K
S
T
N
F
K
----
T
I
L
E
---
W
E
-----
P
K
---
P
V
N
-------
Q
---
V
Y
----
T
V
-----------------
Q
--------
I
-
S
T
------
K
--
S
-
G
----
D
W
K
S
K
C
F
---
Y
T
T
---
D
----
T
E
C
--
D
-
L
-
T
D
E
----
I
V
--
K
D
V
K
Q
--
T
Y
L
A
---
R
V
F
S
Y
P
A
G
N
V
E
S
----
T
E
P
L
Y
E
N
S
P
EFTPYLE
T
28
SP3
47.57
7%
-65.45
- C4 -
1EHX
-
?
A:
[1-94]
----MQDPTINP
T
S
I
S
A
K
A
G
SFAD
T
K
I
T
---
L
------
T
P
---
N
G
N
-------
T
F
N
-
G
I
----
S
E
L
----
Q
-
S
---
S
-----
Q
--------
Y
-
T
K
------
G
--
T
-
N
----
E
V
T
L
L
A
S
Y
L
N
T
L
P
---
E
----
N
T
T
--
K
-
T
-
L
T
F
----
D
F
--
G
-
V
G
T
--
K
N
P
----
K
L
T
I
T
V
L
P
K
D
I
P
----
G
L
E
--------------
29
SP3
46.55
9%
-87.31
- C4 -
1IM3
-
US02_HCMVA
D:
[1-95]
----P
W
F
Q
I
E
D
N
R
C
Y
I
D
N
G
K
----
L
F
A
R
---
G
------
S
I
---
V
G
N
MS
R
F
V
F
D
P
---
K
A
----
D
Y
G
----
G
-
V
---
G
-----
E
N
L
Y
V
H
ADD
V
-
E
F
------
V
--
P
-
G
E
S
L
-
K
W
N
V
R
N
L
---
D
V
M
PIF
E
----
T
L
A
--
L
-
R
--------
L
V
--
L
-
Q
G
D
V
I
W
L
R
C
V
P
E
L
--------------------------------
37
SP3
45.65
11%
-49.50
- C4 -
1FNF
-
?
?:
[1-94]
--------------------------------------
P
L
---
S
P
P
-------
T
---
N
L
----
H
L
E
A
N
P-
D
-
T
---
G
-----
V
--------
L
-
T
V
S
W
E
R
ST
T
--
P
-
D
IT
G
Y
R
I
T
T
T
P
T
---
N
G
Q
---
Q
G
N
S
L
E
E
V
--
V
-
H
-
A
D
Q
SSCT
F
D
N
L
S
-
P
G
L
---------
E
Y
N
V
S
V
Y
T
V
K
D
D
----
K
E
S
V
P
I
S
D
T
I
I
P
A
----
4
PsiBlast
44.35
33%
-50.14
- C5 -
1M1H
-
NUSG_AQUAE
A:
[86-123]
-------------------------------------------------------------------------------------------
F
-
R
I
------
E
--
N
-
G
----
E
V
K
V
-
V
E
---
S
V
E
---
G
----
D
T
C
--
V
-
N
-
A
P
P
----
I
S
--
K
-
P
G
Q
--
K
I
T
C
K
E
N
K
--------------------------------
22
HHSearch
44.25
11%
-66.47
- C3 -
2JO6
-
NIRD_ECOLI
A:
[22-83]
-----------------------------------------------------
V
---
C
A
----
L
L
G
----
D
-
E
---
Q
-----
V
--------
A
-
I
F
------
R
PY
H
-
S
D---
Q
V
F
A
I
S
N
---
I
D
P
---
F
----
F
E
S
SV
L
-
S
-
R
G
L
----
I
A
--
E
H
Q
G
E
L
-
W
V
A
S
P
L
K
K
Q
R
F
R
L
S
--------------------------
32
SP3
43.76
9%
-2.01
- C4 -
1JMX
-
?
A:
[282-363]
--G
K
A
R
L
L
AVQP
A
F
I
K
A
G
G
E
----
S
E
I
T
---
L
------
V
G
---
S
G
L
-------
A
---
G
K
----
P
D
L
----
G
-
A
---
G
VEVTE
V
--------
L
-
E
Q
------
T
--
P
-
T
----
L
V
R
L
K
A
R
---
A
A
A
---
D
---------------------
A
--
K
-
P
G
Q
--
R
E
V
A
V
G
T
L
K
G
V
N
L
A
V
Y
D
-----------------------
21
HHSearch
43.67
7%
-70.64
- C3 -
3GCE
1
?
A:
[26-81]
-----------------------------------------------------
T
---
A
F
----
D
V
D
----
G
-
D
---
E
-----
V
--------
M
-
V
V
------
R
D
-
G
-
D
----
S
V
Y
A
I
S
N
---
L
C
S
---
H
----
A
E
A
--
Y
L
D
-
M
G
V
----
F
H
--
A
-
E
S
L
--
E
I
E
C
P
L
H
V
G
R
F
D
V
---------------------------
6
PsiBlast
43.19
33%
-51.77
- C5 -
1NPR
-
NUSG_AQUAE
A:
[86-123]
-------------------------------------------------------------------------------------------
F
-
R
I
------
E
--
N
-
G
----
E
V
K
V
-
V
E
---
S
V
E
---
G
----
D
T
C
--
V
-
N
-
A
P
P
----
I
S
--
K
-
P
G
Q
--
K
I
T
C
K
E
N
K
--------------------------------
5
PsiBlast
42.24
33%
-54.43
- C5 -
1NPP
-
NUSG_AQUAE
A:
[86-123]
-------------------------------------------------------------------------------------------
F
-
R
I
------
E
--
N
-
G
----
E
V
K
V
-
V
E
---
S
V
E
---
G
----
D
T
C
--
V
-
N
-
A
P
P
----
I
S
--
K
-
P
G
Q
--
K
I
T
C
K
E
N
K
--------------------------------
3
PsiBlast
41.50
33%
-48.18
- C5 -
1M1G
-
NUSG_AQUAE
A:
[86-123]
-------------------------------------------------------------------------------------------
F
-
R
I
------
E
--
N
-
G
----
E
V
K
V
-
V
E
---
S
V
E
---
G
----
D
T
C
--
V
-
N
-
A
P
P
----
I
S
--
K
-
P
G
Q
--
K
I
T
C
K
E
N
K
--------------------------------
13
Fugue
36.77
13%
-11.26
- C4 -
3D33
-
?
A:
[8-108]
----------PV
K
D
V
E
L
D
G
R
----
W
D
D
N
CP
I
T
------
V
F
---
T
D
G
-------
Y
---
L
L
----
T
L
K
N
ASP
D
-
R
---
D
M
----
T
--------
I
-
R
I
------
T
--
D
M
A
----
K
G
G
V
V
Y
E
---
N
D
I
---
P
----
E
V
Q
--
S
-
A
-
Y
I
T
----
I
S
--
I
-
A
N
F
--
P
----
A
E
E
Y
K
L
E
I
T
G
T
P
S
G
----
H
L
T
G
Y
F
T
K
E--------
20
HHSearch
35.71
11%
-13.40
* C3 *
3C0D
-
?
A:
[21-81]
-----------------------------------------------------
A
---
T
V
----
L
I
E
----
G
-
E
---
R
-----
V
--------
A
-
L
F
------
Y
I
P
D
-
S
----
G
V
Y
A
V
Q
D
---
W
D
P
---
I
----
G
K
A
YV
M
-
S
-
R
G
I
----
V
G
--
D
I
N
G
E
M
-
C
V
A
S
P
L
Y
K
Q
H
F
S
L
K
--------------------------
User Run . : Multi Template Modeling Result:
.........10........20........30........40........50........60........70........80.....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AVVTVDGEVYGTYSLAKDQTIEIQDGNRLRIQNGQAKMEWADCPDQLCVHQKAISRTGESIICLPNQVVVSVQGSKESELDGIVN
41
94.56
100%
-120.53
- C- -
M041
-
A:
[1-96]
A
V
V
T
V
D
G
E
V
Y
G
T
Y
S
L
A
K
D
Q
T
I
E
I
Q
D
G
N
R
L
R
I
Q
N
G
Q
A
K
M
E
W
A
D
C
P
D
Q
L
C
V
H
Q
K
A
I
S
R
T
G
E
S
I
I
C
L
P
N
Q
V
V
V
S
V
Q
G
S
K
E
S
E
L
D
G
I
V
N
51
94.45
100%
-135.33
- C- -
M051
-
A:
[1-82]
A
V
V
T
V
D
G
E
V
Y
G
T
Y
S
L
A
K
D
Q
T
I
E
I
Q
D
G
N
R
L
R
I
Q
N
G
Q
A
K
M
E
W
A
D
C
P
D
Q
L
C
V
H
Q
K
A
I
S
R
T
G
E
S
I
I
C
L
P
N
Q
V
V
V
S
V
Q
G
S
----------
39
91.33
100%
-121.83
- C- -
M039
-
A:
[1-96]
A
V
V
T
V
D
G
E
V
Y
G
T
Y
S
L
A
K
D
Q
T
I
E
I
Q
D
G
N
R
L
R
I
Q
N
G
Q
A
K
M
E
W
A
D
C
P
D
Q
L
C
V
H
Q
K
A
I
S
R
T
G
E
S
I
I
C
L
P
N
Q
V
V
V
S
V
Q
G
S
K
E
S
E
L
D
G
I
V
N
40
88.15
100%
-115.26
- C- -
M040
-
A:
[1-96]
A
V
V
T
V
D
G
E
V
Y
G
T
Y
S
L
A
K
D
Q
T
I
E
I
Q
D
G
N
R
L
R
I
Q
N
G
Q
A
K
M
E
W
A
D
C
P
D
Q
L
C
V
H
Q
K
A
I
S
R
T
G
E
S
I
I
C
L
P
N
Q
V
V
V
S
V
Q
G
S
K
E
S
E
L
D
G
I
V
N
57
76.15
100%
-82.71
- C- -
M057
-
A:
[25-85]
------------------------
D
G
N
R
L
R
I
Q
N
G
Q
A
K
M
E
W
A
D
C
P
D
Q
L
C
V
H
Q
K
A
I
S
R
T
G
E
S
I
I
C
L
P
N
Q
V
V
V
S
V
Q
G
S
K
E
S
E
L
D
G
I
V
N